bpp::AbstractSubstitutionMapping Member List

This is the complete list of members for bpp::AbstractSubstitutionMapping, including all inherited members.

AbstractMapping()	bpp::AbstractMapping	inline
AbstractMapping(size_t nb)	bpp::AbstractMapping	inline
AbstractMapping(const AbstractMapping &absm)=default	bpp::AbstractMapping
AbstractSubstitutionMapping()	bpp::AbstractSubstitutionMapping	inline
AbstractSubstitutionMapping(const AbstractSubstitutionMapping &absm)	bpp::AbstractSubstitutionMapping	inline
clone() const =0	bpp::AbstractSubstitutionMapping	pure virtual
getBranch(unsigned int branchId) const =0	bpp::MappingInterface	pure virtual
getBranch(unsigned int branchId)=0	bpp::MappingInterface	pure virtual
getNumberOfBranches() const =0	bpp::MappingInterface	pure virtual
bpp::getNumberOfSites() const =0	bpp::MappingInterface	pure virtual
bpp::AbstractMapping::getNumberOfSites() const	bpp::AbstractMapping	inlinevirtual
getNumberOfSubstitutionTypes() const	bpp::AbstractSubstitutionMapping	inlinevirtual
bpp::getSitePosition(size_t index) const =0	bpp::MappingInterface	pure virtual
bpp::AbstractMapping::getSitePosition(size_t index) const	bpp::AbstractMapping	inlinevirtual
MappingInterface()	bpp::MappingInterface	inline
nbSites_	bpp::AbstractMapping	protected
numberOfTypes_	bpp::AbstractSubstitutionMapping	private
operator()(unsigned int branchId, size_t siteIndex, size_t type)=0	bpp::SubstitutionMapping	pure virtual
operator()(unsigned int branchId, size_t siteIndex, size_t type) const =0	bpp::SubstitutionMapping	pure virtual
operator=(const AbstractSubstitutionMapping &absm)	bpp::AbstractSubstitutionMapping	inline
bpp::AbstractMapping::operator=(const AbstractMapping &absm)=default	bpp::AbstractMapping
setNumberOfSites(size_t numberOfSites)	bpp::AbstractMapping	inlinevirtual
setNumberOfSubstitutionTypes(size_t numberOfTypes)	bpp::AbstractSubstitutionMapping	inlinevirtual
bpp::setSitePosition(size_t index, int position)=0	bpp::MappingInterface	pure virtual
bpp::AbstractMapping::setSitePosition(size_t index, int position)	bpp::AbstractMapping	inlinevirtual
sitesPositions_	bpp::AbstractMapping	protected
SubstitutionMapping()	bpp::SubstitutionMapping	inline
~AbstractMapping()	bpp::AbstractMapping	inlinevirtual
~AbstractSubstitutionMapping()	bpp::AbstractSubstitutionMapping	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~MappingInterface()	bpp::MappingInterface	inlinevirtual
~SubstitutionMapping()	bpp::SubstitutionMapping	inlinevirtual