bpp::AbstractTreeParsimonyScore Member List

This is the complete list of members for bpp::AbstractTreeParsimonyScore, including all inherited members.

AbstractTreeParsimonyScore(std::shared_ptr< TreeTemplate< Node >> tree, std::shared_ptr< const SiteContainerInterface > data, bool verbose, bool includeGaps)	bpp::AbstractTreeParsimonyScore
AbstractTreeParsimonyScore(std::shared_ptr< TreeTemplate< Node >> tree, std::shared_ptr< const SiteContainerInterface > data, std::shared_ptr< const StateMapInterface > statesMap, bool verbose)	bpp::AbstractTreeParsimonyScore
alphabet_	bpp::AbstractTreeParsimonyScore	private
clone() const =0	bpp::TreeParsimonyScoreInterface	pure virtual
data_	bpp::AbstractTreeParsimonyScore	private
getScore() const =0	bpp::TreeParsimonyScoreInterface	pure virtual
getScoreForSite(size_t site) const =0	bpp::TreeParsimonyScoreInterface	pure virtual
getScorePerSite() const override	bpp::AbstractTreeParsimonyScore	virtual
getStateMap() const override	bpp::AbstractTreeParsimonyScore	inlinevirtual
getTreeTemplate() const	bpp::AbstractTreeParsimonyScore	inlinevirtual
getTreeTemplate_()	bpp::AbstractTreeParsimonyScore	inlineprotectedvirtual
init_(std::shared_ptr< const SiteContainerInterface > data, bool verbose)	bpp::AbstractTreeParsimonyScore	private
nbStates_	bpp::AbstractTreeParsimonyScore	private
stateMap() const override	bpp::AbstractTreeParsimonyScore	inlinevirtual
statesMap_	bpp::AbstractTreeParsimonyScore	private
tree() const override	bpp::AbstractTreeParsimonyScore	inlinevirtual
tree_()	bpp::AbstractTreeParsimonyScore	inlineprotectedvirtual
TreeParsimonyScoreInterface()	bpp::TreeParsimonyScoreInterface	inline
treePtr_	bpp::AbstractTreeParsimonyScore	private
treeTemplate() const	bpp::AbstractTreeParsimonyScore	inlinevirtual
treeTemplate_()	bpp::AbstractTreeParsimonyScore	inlineprotectedvirtual
~AbstractTreeParsimonyScore()	bpp::AbstractTreeParsimonyScore	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~TreeParsimonyScoreInterface()	bpp::TreeParsimonyScoreInterface	inlinevirtual