bpp::AbstractWeightedSubstitutionCount Member List

This is the complete list of members for bpp::AbstractWeightedSubstitutionCount, including all inherited members.

AbstractWeightedSubstitutionCount(std::shared_ptr< const AlphabetIndex2 > weights)	bpp::AbstractWeightedSubstitutionCount	inline
AbstractWeightedSubstitutionCount(const AbstractWeightedSubstitutionCount &index)	bpp::AbstractWeightedSubstitutionCount	inline
clone() const =0	bpp::SubstitutionCountInterface	pure virtual
getAllNumbersOfSubstitutions(double length, size_t type) const =0	bpp::SubstitutionCountInterface	pure virtual
getAlphabet() const	bpp::SubstitutionCountInterface	inlinevirtual
getNumberOfStates() const	bpp::SubstitutionCountInterface	inlinevirtual
getNumberOfSubstitutions(size_t initialState, size_t finalState, double length, size_t type) const =0	bpp::SubstitutionCountInterface	pure virtual
getNumberOfSubstitutionsPerType(size_t initialState, size_t finalState, double length) const =0	bpp::SubstitutionCountInterface	pure virtual
getNumberOfSubstitutionTypes() const	bpp::SubstitutionCountInterface	inlinevirtual
getSubstitutionRegister() const =0	bpp::SubstitutionCountInterface	pure virtual
getWeights() const	bpp::AbstractWeightedSubstitutionCount	inlinevirtual
hasSubstitutionRegister() const =0	bpp::SubstitutionCountInterface	pure virtual
hasWeights() const	bpp::AbstractWeightedSubstitutionCount	inlinevirtual
operator=(const AbstractWeightedSubstitutionCount &index)	bpp::AbstractWeightedSubstitutionCount	inline
setSubstitutionModel(std::shared_ptr< const SubstitutionModelInterface > model)=0	bpp::SubstitutionCountInterface	pure virtual
setSubstitutionRegister(std::shared_ptr< const SubstitutionRegisterInterface > reg)=0	bpp::SubstitutionCountInterface	pure virtual
setWeights(std::shared_ptr< const AlphabetIndex2 > weights)	bpp::AbstractWeightedSubstitutionCount	virtual
storeAllNumbersOfSubstitutions(double length, size_t type, Eigen::MatrixXd &mat) const =0	bpp::SubstitutionCountInterface	pure virtual
SubstitutionCountInterface()	bpp::SubstitutionCountInterface	inline
weights_	bpp::AbstractWeightedSubstitutionCount	protected
weightsHaveChanged()=0	bpp::AbstractWeightedSubstitutionCount	protectedpure virtual
~AbstractWeightedSubstitutionCount()	bpp::AbstractWeightedSubstitutionCount	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~SubstitutionCountInterface()	bpp::SubstitutionCountInterface	inlinevirtual