|
bpp-phyl3 3.0.0
|
This is the complete list of members for bpp::CanonicalStateMap, including all inherited members.
| AbstractStateMap(std::shared_ptr< const Alphabet > alphabet) | bpp::AbstractStateMap | inline |
| AbstractStateMap(const AbstractStateMap &absm) | bpp::AbstractStateMap | inline |
| alphabet() const override | bpp::AbstractStateMap | inlinevirtual |
| alphabet_ | bpp::AbstractStateMap | protected |
| CanonicalStateMap(std::shared_ptr< const Alphabet > alphabet, bool includeGaps) | bpp::CanonicalStateMap | |
| CanonicalStateMap(const StateMapInterface &sm, bool includeGaps) | bpp::CanonicalStateMap | |
| clone() const | bpp::CanonicalStateMap | inlinevirtual |
| getAlphabet() const override | bpp::AbstractStateMap | inlinevirtual |
| getAlphabetStateAsChar(size_t index) const override | bpp::AbstractStateMap | inlinevirtual |
| getAlphabetStateAsInt(size_t index) const override | bpp::AbstractStateMap | inlinevirtual |
| getAlphabetStates() const override | bpp::AbstractStateMap | inlinevirtual |
| getModelStates(int code) const override | bpp::AbstractStateMap | inlinevirtual |
| getModelStates(const std::string &code) const override | bpp::AbstractStateMap | inlinevirtual |
| getNumberOfModelStates() const override | bpp::AbstractStateMap | inlinevirtual |
| getStateDescription(size_t index) const | bpp::CanonicalStateMap | inlinevirtual |
| operator!=(const StateMapInterface &sm) const override | bpp::AbstractStateMap | inlinevirtual |
| operator=(const AbstractStateMap &absm) | bpp::AbstractStateMap | inline |
| operator==(const StateMapInterface &sm) const override | bpp::AbstractStateMap | inlinevirtual |
| states_ | bpp::AbstractStateMap | protected |
| ~Clonable()=default | bpp::Clonable | virtual |
| ~StateMapInterface() | bpp::StateMapInterface | inlinevirtual |