bpp-phyl3
3.0.0
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This is the complete list of members for bpp::CanonicalStateMap, including all inherited members.
AbstractStateMap(std::shared_ptr< const Alphabet > alphabet) | bpp::AbstractStateMap | inline |
AbstractStateMap(const AbstractStateMap &absm) | bpp::AbstractStateMap | inline |
alphabet() const override | bpp::AbstractStateMap | inlinevirtual |
alphabet_ | bpp::AbstractStateMap | protected |
CanonicalStateMap(std::shared_ptr< const Alphabet > alphabet, bool includeGaps) | bpp::CanonicalStateMap | |
CanonicalStateMap(const StateMapInterface &sm, bool includeGaps) | bpp::CanonicalStateMap | |
clone() const | bpp::CanonicalStateMap | inlinevirtual |
getAlphabet() const override | bpp::AbstractStateMap | inlinevirtual |
getAlphabetStateAsChar(size_t index) const override | bpp::AbstractStateMap | inlinevirtual |
getAlphabetStateAsInt(size_t index) const override | bpp::AbstractStateMap | inlinevirtual |
getAlphabetStates() const override | bpp::AbstractStateMap | inlinevirtual |
getModelStates(int code) const override | bpp::AbstractStateMap | inlinevirtual |
getModelStates(const std::string &code) const override | bpp::AbstractStateMap | inlinevirtual |
getNumberOfModelStates() const override | bpp::AbstractStateMap | inlinevirtual |
getStateDescription(size_t index) const | bpp::CanonicalStateMap | inlinevirtual |
operator!=(const StateMapInterface &sm) const override | bpp::AbstractStateMap | inlinevirtual |
operator=(const AbstractStateMap &absm) | bpp::AbstractStateMap | inline |
operator==(const StateMapInterface &sm) const override | bpp::AbstractStateMap | inlinevirtual |
states_ | bpp::AbstractStateMap | protected |
~Clonable()=default | bpp::Clonable | virtual |
~StateMapInterface() | bpp::StateMapInterface | inlinevirtual |