bpp-phyl3  3.0.0
bpp::CompleteSubstitutionRegister Member List

This is the complete list of members for bpp::CompleteSubstitutionRegister, including all inherited members.

AbstractSubstitutionRegister(std::shared_ptr< const StateMapInterface > stateMap, const std::string &name)bpp::AbstractSubstitutionRegisterinline
AbstractSubstitutionRegister(const AbstractSubstitutionRegister &asr)bpp::AbstractSubstitutionRegisterinline
alphabet() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
clone() const overridebpp::CompleteSubstitutionRegisterinlinevirtual
CompleteSubstitutionRegister(std::shared_ptr< const SubstitutionRegisterInterface > reg)bpp::CompleteSubstitutionRegisterinline
CompleteSubstitutionRegister(const CompleteSubstitutionRegister &csr)bpp::CompleteSubstitutionRegisterinline
getAlphabet() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
getName() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
getNumberOfSubstitutionTypes() const overridebpp::CompleteSubstitutionRegisterinlinevirtual
getStateMap() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
getType(size_t fromState, size_t toState) const overridebpp::CompleteSubstitutionRegisterinlinevirtual
getTypeName(size_t type) const overridebpp::CompleteSubstitutionRegisterinlinevirtual
isRegComplete_bpp::CompleteSubstitutionRegisterprivate
name_bpp::AbstractSubstitutionRegisterprotected
operator=(const CompleteSubstitutionRegister &csr)bpp::CompleteSubstitutionRegisterinline
bpp::AbstractSubstitutionRegister::operator=(const AbstractSubstitutionRegister &asr)bpp::AbstractSubstitutionRegisterinline
preg_bpp::CompleteSubstitutionRegisterprivate
stateMap() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
stateMap_bpp::AbstractSubstitutionRegisterprotected
SubstitutionRegisterInterface()bpp::SubstitutionRegisterInterfaceinline
~AbstractSubstitutionRegister()bpp::AbstractSubstitutionRegisterinlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~CompleteSubstitutionRegister()bpp::CompleteSubstitutionRegisterinlinevirtual
~SubstitutionRegisterInterface()bpp::SubstitutionRegisterInterfaceinlinevirtual