bpp-phyl3 3.0.0
bpp::ConstantRateDistribution Member List

This is the complete list of members for bpp::ConstantRateDistribution, including all inherited members.

AbstractDiscreteDistribution(size_t nbClasses, const std::string &prefix="", short discretization=DISCRETIZATION_EQUAL_PROB)bpp::AbstractDiscreteDistribution
AbstractDiscreteDistribution(size_t nbClasses, double precision, const std::string &prefix="", short discretization=DISCRETIZATION_EQUAL_PROB)bpp::AbstractDiscreteDistribution
AbstractDiscreteDistribution(const AbstractDiscreteDistribution &adde)bpp::AbstractDiscreteDistribution
AbstractParameterAliasable(const std::string &prefix)bpp::AbstractParameterAliasable
AbstractParameterAliasable(const AbstractParameterAliasable &ap)bpp::AbstractParameterAliasable
AbstractParametrizable(const std::string &prefix)bpp::AbstractParametrizable
add(double category, double probability)bpp::ConstantDistributionvirtual
add(double category, double probability)bpp::ConstantDistributionvirtual
addParameter_(Parameter *parameter)bpp::ConstantDistributionprotectedvirtual
addParameters_(const ParameterList &parameters)bpp::ConstantDistributionprotectedvirtual
aliasListenersRegister_bpp::ConstantDistributionprivate
aliasParameters(const std::string &p1, const std::string &p2)=0bpp::ConstantDistributionpure virtual
aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)=0bpp::ConstantDistributionpure virtual
aliasParameters(const std::string &p1, const std::string &p2)bpp::ConstantDistributionvirtual
aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)bpp::ConstantDistributionvirtual
bounds_bpp::ConstantDistributionprotected
clone() constbpp::ConstantRateDistributioninlinevirtual
ConstantDistribution(double value)bpp::ConstantDistribution
ConstantDistribution(const ConstantDistribution &)bpp::ConstantDistribution
ConstantRateDistribution()bpp::ConstantRateDistributioninline
deleteParameter_(size_t index)bpp::ConstantDistributionprotectedvirtual
deleteParameter_(std::string &name)bpp::ConstantDistributionprotectedvirtual
deleteParameters_(const std::vector< std::string > &names)bpp::ConstantDistributionprotectedvirtual
DiscreteDistributionInterface()bpp::DiscreteDistributionInterface
DISCRETIZATION_EQUAL_INTERVALbpp::ConstantDistributionstatic
DISCRETIZATION_EQUAL_PROBbpp::ConstantDistributionstatic
DISCRETIZATION_EQUAL_PROB_WHEN_POSSIBLEbpp::ConstantDistributionstatic
discretizationScheme_bpp::ConstantDistributionprotected
discretize()bpp::ConstantDistributionvirtual
discretizeEqualIntervals()bpp::ConstantDistributionprotected
discretizeEqualProportions()bpp::ConstantDistributionprotected
distribution_bpp::ConstantDistributionprotected
Expectation(double a) constbpp::ConstantDistributionvirtual
fireParameterChanged(const ParameterList &parameters)bpp::ConstantDistributionvirtual
getAlias(const std::string &name) const=0bpp::ConstantDistributionpure virtual
getAlias(const std::string &name) constbpp::ConstantDistributionvirtual
getAliasedParameters(const ParameterList &pl) constbpp::ConstantDistribution
getAliases() const=0bpp::ConstantDistributionpure virtual
getAliases() constbpp::ConstantDistributionvirtual
getBound(size_t i) constbpp::ConstantDistributionvirtual
getBound(size_t i) constbpp::ConstantDistributionvirtual
getBounds() constbpp::ConstantDistributionvirtual
getBounds() constbpp::ConstantDistributionvirtual
getCategories() constbpp::ConstantDistributionvirtual
getCategories() constbpp::ConstantDistributionvirtual
getCategory(size_t categoryIndex) constbpp::ConstantDistributionvirtual
getCategory(size_t categoryIndex) constbpp::ConstantDistributionvirtual
getCategoryIndex(double value) constbpp::ConstantDistributionvirtual
getCategoryIndex(double value) constbpp::ConstantDistributionvirtual
getFrom(const std::string &name) constbpp::ConstantDistribution
getFromParameters(const ParameterList &pl) constbpp::ConstantDistribution
getIInfCumulativeProbability(double category) constbpp::ConstantDistributionvirtual
getIInfCumulativeProbability(double category) constbpp::ConstantDistributionvirtual
getIndependentParameters() const=0bpp::ConstantDistributionpure virtual
getIndependentParameters() constbpp::ConstantDistributionvirtual
getInfCumulativeProbability(double category) constbpp::ConstantDistributionvirtual
getInfCumulativeProbability(double category) constbpp::ConstantDistributionvirtual
getLowerBound() constbpp::ConstantDistributionvirtual
getName() constbpp::ConstantDistributionvirtual
getNamespace() const=0bpp::ConstantDistributionpure virtual
getNamespace() const overridebpp::ConstantDistributionvirtual
getNumberOfCategories() constbpp::ConstantDistributionvirtual
getNumberOfCategories() constbpp::ConstantDistributionvirtual
getNumberOfIndependentParameters() const=0bpp::ConstantDistributionpure virtual
getNumberOfIndependentParameters() constbpp::ConstantDistributionvirtual
getNumberOfParameters() const=0bpp::ConstantDistributionpure virtual
getNumberOfParameters() const overridebpp::ConstantDistributionvirtual
getParameter(const std::string &name) constbpp::ConstantDistribution
getParameter(size_t i) constbpp::ConstantDistributionprotected
getParameter(size_t i)bpp::ConstantDistributionprotected
getParameter_(const std::string &name)bpp::ConstantDistributionprotected
getParameter_(size_t index)bpp::ConstantDistributionprotected
getParameter_(size_t index) constbpp::ConstantDistributionprotected
getParameterNameWithoutNamespace(const std::string &name) const=0bpp::ConstantDistributionpure virtual
getParameterNameWithoutNamespace(const std::string &name) const overridebpp::ConstantDistributionvirtual
getParameters() const=0bpp::ConstantDistributionpure virtual
getParameters() const overridebpp::ConstantDistributionvirtual
getParameters_()=0bpp::ConstantDistributionprotectedpure virtual
getParameters_() overridebpp::ConstantDistributionprotectedvirtual
getParameterValue(const std::string &name) const=0bpp::ConstantDistributionpure virtual
getParameterValue(const std::string &name) const overridebpp::ConstantDistributionvirtual
getParameterWithNamespace_(const std::string &name)bpp::ConstantDistributionprotected
getParameterWithNamespace_(const std::string &name) constbpp::ConstantDistributionprotected
getProbabilities() constbpp::ConstantDistributionvirtual
getProbabilities() constbpp::ConstantDistributionvirtual
getProbability(size_t categoryIndex) constbpp::ConstantDistributionvirtual
getProbability(double category) constbpp::ConstantDistributionvirtual
getProbability(size_t categoryIndex) constbpp::ConstantDistributionvirtual
getProbability(double category) constbpp::ConstantDistributionvirtual
getSSupCumulativeProbability(double category) constbpp::ConstantDistributionvirtual
getSSupCumulativeProbability(double category) constbpp::ConstantDistributionvirtual
getSupCumulativeProbability(double category) constbpp::ConstantDistributionvirtual
getSupCumulativeProbability(double category) constbpp::ConstantDistributionvirtual
getUpperBound() constbpp::ConstantDistributionvirtual
getValueCategory(double value) constbpp::ConstantDistributionvirtual
getValueCategory(double value) constbpp::ConstantDistributionvirtual
hasIndependentParameter(const std::string &name) constbpp::ConstantDistribution
hasParameter(const std::string &name) const=0bpp::ConstantDistributionpure virtual
hasParameter(const std::string &name) const overridebpp::ConstantDistributionvirtual
includeParameters_(const ParameterList &parameters)bpp::ConstantDistributionprotectedvirtual
independentParameters_bpp::ConstantDistributionprivate
intMinMax_bpp::ConstantDistributionprotected
matchParametersValues(const ParameterList &parameters)=0bpp::ConstantDistributionpure virtual
matchParametersValues(const ParameterList &parameters) overridebpp::ConstantDistributionvirtual
median_bpp::ConstantDistributionprotected
numberOfCategories_bpp::ConstantDistributionprotected
operator=(const ConstantDistribution &)bpp::ConstantDistribution
bpp::AbstractDiscreteDistribution::operator=(const AbstractDiscreteDistribution &adde)bpp::AbstractDiscreteDistribution
bpp::AbstractParameterAliasable::operator=(const AbstractParameterAliasable &ap)bpp::AbstractParameterAliasable
parameter(const std::string &name) const=0bpp::ConstantDistributionpure virtual
parameter(const std::string &name) const overridebpp::ConstantDistributionvirtual
ParameterAliasable()bpp::ParameterAliasable
parameters_bpp::ConstantDistributionprivate
Parametrizable()bpp::Parametrizable
pProb(double x) constbpp::ConstantDistributionvirtual
precision() constbpp::ConstantDistribution
precision() constbpp::ConstantDistribution
prefix_bpp::ConstantDistributionprivate
print(OutputStream &out) constbpp::ConstantDistributionvirtual
print(OutputStream &out) constbpp::ConstantDistributionvirtual
qProb(double x) constbpp::ConstantDistributionvirtual
rand() constbpp::ConstantDistributionvirtual
rand() constbpp::ConstantDistributionvirtual
randC() constbpp::ConstantDistributionvirtual
removeConstraint(const std::string &name)=0bpp::ConstantDistributionpure virtual
removeConstraint(const std::string &name) overridebpp::ConstantDistributionvirtual
resetParameters_()bpp::ConstantDistributionprotected
restrictToConstraint(const ConstraintInterface &c)bpp::ConstantDistributionvirtual
set(double category, double probability)bpp::ConstantDistributionvirtual
set(double category, double probability)bpp::ConstantDistributionvirtual
setAllParametersValues(const ParameterList &parameters)=0bpp::ConstantDistributionpure virtual
setAllParametersValues(const ParameterList &parameters) overridebpp::ConstantDistributionvirtual
setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint)=0bpp::ConstantDistributionpure virtual
setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint) overridebpp::ConstantDistributionvirtual
setMedian(bool median)bpp::ConstantDistributionvirtual
setMedian(bool median)bpp::ConstantDistributionvirtual
setNamespace(const std::string &prefix)=0bpp::ConstantDistributionpure virtual
setNamespace(const std::string &prefix)bpp::ConstantDistributionvirtual
setNumberOfCategories(size_t nbClasses)bpp::ConstantDistributionvirtual
setNumberOfCategories(size_t nbClasses)bpp::ConstantDistributionvirtual
setParametersValues(const ParameterList &parameters)=0bpp::ConstantDistributionpure virtual
setParametersValues(const ParameterList &parameters) overridebpp::ConstantDistributionvirtual
setParameterValue(const std::string &name, double value)=0bpp::ConstantDistributionpure virtual
setParameterValue(const std::string &name, double value) overridebpp::ConstantDistributionvirtual
shareParameter_(const std::shared_ptr< Parameter > &parameter)bpp::ConstantDistributionprotectedvirtual
shareParameters_(const ParameterList &parameters)bpp::ConstantDistributionprotectedvirtual
strictLowerBound() constbpp::ConstantDistributionvirtual
strictLowerBound() constbpp::ConstantDistributionvirtual
strictUpperBound() constbpp::ConstantDistributionvirtual
strictUpperBound() constbpp::ConstantDistributionvirtual
unaliasParameters(const std::string &p1, const std::string &p2)=0bpp::ConstantDistributionpure virtual
unaliasParameters(const std::string &p1, const std::string &p2)bpp::ConstantDistributionvirtual
value_bpp::ConstantDistributionprivate
~AbstractDiscreteDistribution()bpp::AbstractDiscreteDistributionvirtual
~AbstractParameterAliasable()bpp::AbstractParameterAliasablevirtual
~AbstractParametrizable()bpp::AbstractParametrizablevirtual
~Clonable()=defaultbpp::Clonablevirtual
~ConstantDistribution()bpp::ConstantDistributionvirtual
~DiscreteDistributionInterface()bpp::DiscreteDistributionInterfacevirtual
~ParameterAliasable()bpp::ParameterAliasablevirtual
~Parametrizable()bpp::Parametrizablevirtual