bpp::DRTreeParsimonyData Member List

This is the complete list of members for bpp::DRTreeParsimonyData, including all inherited members.

AbstractTreeParsimonyData(std::shared_ptr< const TreeTemplate< Node >> tree)	bpp::AbstractTreeParsimonyData	inline
AbstractTreeParsimonyData(const AbstractTreeParsimonyData &atpd)	bpp::AbstractTreeParsimonyData	inline
clone() const override	bpp::DRTreeParsimonyData	inlinevirtual
DRTreeParsimonyData(std::shared_ptr< const TreeTemplate< Node >> tree)	bpp::DRTreeParsimonyData	inline
DRTreeParsimonyData(const DRTreeParsimonyData &data)	bpp::DRTreeParsimonyData
getArrayPosition(int parentId, int sonId, size_t currentPosition) const override	bpp::DRTreeParsimonyData	inlinevirtual
getBitsetsArray(int nodeId, int neighborId)	bpp::DRTreeParsimonyData	inline
getBitsetsArray(int nodeId, int neighborId) const	bpp::DRTreeParsimonyData	inline
getNumberOfDistinctSites() const	bpp::DRTreeParsimonyData	inline
getNumberOfSites() const	bpp::DRTreeParsimonyData	inline
getNumberOfStates() const	bpp::DRTreeParsimonyData	inline
getRootArrayPosition(size_t site) const override	bpp::AbstractTreeParsimonyData	inlinevirtual
getRootBitset(size_t i) const	bpp::DRTreeParsimonyData	inline
getRootBitsets()	bpp::DRTreeParsimonyData	inline
getRootBitsets() const	bpp::DRTreeParsimonyData	inline
getRootScore(size_t i) const	bpp::DRTreeParsimonyData	inline
getRootScores()	bpp::DRTreeParsimonyData	inline
getRootScores() const	bpp::DRTreeParsimonyData	inline
getScoresArray(int nodeId, int neighborId)	bpp::DRTreeParsimonyData	inline
getScoresArray(int nodeId, int neighborId) const	bpp::DRTreeParsimonyData	inline
getTree() const override	bpp::AbstractTreeParsimonyData	inlinevirtual
getWeight(size_t pos) const	bpp::AbstractTreeParsimonyData	inline
init(std::shared_ptr< const SiteContainerInterface > sites, std::shared_ptr< const StateMapInterface > stateMap)	bpp::DRTreeParsimonyData
init_(const Node *node, std::shared_ptr< const SiteContainerInterface > sites, std::shared_ptr< const StateMapInterface > stateMap)	bpp::DRTreeParsimonyData	protected
leafData(int nodeId)	bpp::DRTreeParsimonyData	inline
leafData(int nodeId) const	bpp::DRTreeParsimonyData	inline
leafData_	bpp::DRTreeParsimonyData	mutableprivate
nbDistinctSites_	bpp::DRTreeParsimonyData	private
nbSites_	bpp::DRTreeParsimonyData	private
nbStates_	bpp::DRTreeParsimonyData	private
nodeData(int nodeId) override	bpp::DRTreeParsimonyData	inlinevirtual
nodeData(int nodeId) const override	bpp::DRTreeParsimonyData	inlinevirtual
nodeData_	bpp::DRTreeParsimonyData	mutableprivate
operator=(const DRTreeParsimonyData &data)	bpp::DRTreeParsimonyData
bpp::AbstractTreeParsimonyData::operator=(const AbstractTreeParsimonyData &atpd)	bpp::AbstractTreeParsimonyData	inline
reInit()	bpp::DRTreeParsimonyData
reInit_(const Node *node)	bpp::DRTreeParsimonyData	protected
rootBitsets_	bpp::DRTreeParsimonyData	mutableprivate
rootPatternLinks_	bpp::AbstractTreeParsimonyData	protected
rootScores_	bpp::DRTreeParsimonyData	mutableprivate
rootWeights_	bpp::AbstractTreeParsimonyData	protected
setTree(std::shared_ptr< const TreeTemplate< Node >> tree)	bpp::DRTreeParsimonyData	inline
shrunkData_	bpp::DRTreeParsimonyData	private
tree() const override	bpp::AbstractTreeParsimonyData	inlinevirtual
tree_	bpp::AbstractTreeParsimonyData	protected
TreeParsimonyDataInterface()	bpp::TreeParsimonyDataInterface	inline
~AbstractTreeParsimonyData()	bpp::AbstractTreeParsimonyData	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~DRTreeParsimonyData()	bpp::DRTreeParsimonyData	inlinevirtual
~TreeParsimonyDataInterface()	bpp::TreeParsimonyDataInterface	inlinevirtual