bpp::DistanceEstimation Member List

This is the complete list of members for bpp::DistanceEstimation, including all inherited members.

clone() const override	bpp::DistanceEstimation	inlinevirtual
computeMatrix()	bpp::DistanceEstimation
data() const	bpp::DistanceEstimation	inline
defaultOptimizer_	bpp::DistanceEstimation	private
dist_	bpp::DistanceEstimation	private
DistanceEstimation(std::shared_ptr< SubstitutionProcessInterface > process, size_t verbose=1)	bpp::DistanceEstimation	inline
DistanceEstimation(std::shared_ptr< BranchModelInterface > model, std::shared_ptr< DiscreteDistributionInterface > rateDist, size_t verbose=1)	bpp::DistanceEstimation	inline
DistanceEstimation(std::shared_ptr< SubstitutionProcessInterface > process, std::shared_ptr< const AlignmentDataInterface > sites, size_t verbose=1, bool computeMat=true)	bpp::DistanceEstimation	inline
DistanceEstimation(std::shared_ptr< BranchModelInterface > model, std::shared_ptr< DiscreteDistributionInterface > rateDist, std::shared_ptr< const AlignmentDataInterface > sites, size_t verbose=1, bool computeMat=true)	bpp::DistanceEstimation	inline
DistanceEstimation(const DistanceEstimation &distanceEstimation)	bpp::DistanceEstimation	inline
getData() const	bpp::DistanceEstimation	inline
getMatrix() const	bpp::DistanceEstimation	inline
getOptimizer() const	bpp::DistanceEstimation	inline
getOptimizer()	bpp::DistanceEstimation	inline
getProcess() const	bpp::DistanceEstimation	inline
getVerbose() const	bpp::DistanceEstimation	inline
hasProcess() const	bpp::DistanceEstimation	inline
init_()	bpp::DistanceEstimation	private
matchParametersValues(const ParameterList &parameters)	bpp::DistanceEstimation	inline
numProc_	bpp::DistanceEstimation	private
operator=(const DistanceEstimation &distanceEstimation)	bpp::DistanceEstimation	inline
optimizer() const	bpp::DistanceEstimation	inline
optimizer()	bpp::DistanceEstimation	inline
optimizer_	bpp::DistanceEstimation	private
parameters_	bpp::DistanceEstimation	private
process() const	bpp::DistanceEstimation	inline
process_	bpp::DistanceEstimation	private
resetAdditionalParameters()	bpp::DistanceEstimation	inline
resetOptimizer()	bpp::DistanceEstimation	inline
setAdditionalParameters(const ParameterList &parameters)	bpp::DistanceEstimation	inline
setData(std::shared_ptr< const AlignmentDataInterface > sites=nullptr)	bpp::DistanceEstimation	inline
setOptimizer(std::shared_ptr< OptimizerInterface > optimizer)	bpp::DistanceEstimation	inline
setProcess(std::shared_ptr< SubstitutionProcessInterface > process=nullptr)	bpp::DistanceEstimation	inline
setVerbose(size_t verbose)	bpp::DistanceEstimation	inline
sites_	bpp::DistanceEstimation	private
verbose_	bpp::DistanceEstimation	private
~Clonable()=default	bpp::Clonable	virtual
~DistanceEstimation()	bpp::DistanceEstimation	inlinevirtual