bpp-phyl3  3.0.0
bpp::ExponentialDiscreteRateDistribution Member List

This is the complete list of members for bpp::ExponentialDiscreteRateDistribution, including all inherited members.

AbstractDiscreteDistribution(size_t nbClasses, const std::string &prefix="", short discretization=DISCRETIZATION_EQUAL_PROB)bpp::AbstractDiscreteDistribution
AbstractDiscreteDistribution(size_t nbClasses, double precision, const std::string &prefix="", short discretization=DISCRETIZATION_EQUAL_PROB)bpp::AbstractDiscreteDistribution
AbstractDiscreteDistribution(const AbstractDiscreteDistribution &adde)bpp::AbstractDiscreteDistribution
AbstractParameterAliasable(const std::string &prefix)bpp::AbstractParameterAliasable
AbstractParameterAliasable(const AbstractParameterAliasable &ap)bpp::AbstractParameterAliasable
AbstractParametrizable(const std::string &prefix)bpp::AbstractParametrizable
add(double category, double probability)bpp::ExponentialDiscreteDistributionvirtual
add(double category, double probability)bpp::ExponentialDiscreteDistributionvirtual
addParameter_(Parameter *parameter)bpp::ExponentialDiscreteDistributionprotectedvirtual
addParameters_(const ParameterList &parameters)bpp::ExponentialDiscreteDistributionprotectedvirtual
aliasListenersRegister_bpp::ExponentialDiscreteDistributionprivate
aliasParameters(const std::string &p1, const std::string &p2)=0bpp::ExponentialDiscreteDistributionpure virtual
aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)=0bpp::ExponentialDiscreteDistributionpure virtual
aliasParameters(const std::string &p1, const std::string &p2)bpp::ExponentialDiscreteDistributionvirtual
aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)bpp::ExponentialDiscreteDistributionvirtual
bounds_bpp::ExponentialDiscreteDistributionprotected
clone() constbpp::ExponentialDiscreteRateDistributioninlinevirtual
deleteParameter_(size_t index)bpp::ExponentialDiscreteDistributionprotectedvirtual
deleteParameter_(std::string &name)bpp::ExponentialDiscreteDistributionprotectedvirtual
deleteParameters_(const std::vector< std::string > &names)bpp::ExponentialDiscreteDistributionprotectedvirtual
DiscreteDistributionInterface()bpp::DiscreteDistributionInterface
DISCRETIZATION_EQUAL_INTERVALbpp::ExponentialDiscreteDistributionstatic
DISCRETIZATION_EQUAL_PROBbpp::ExponentialDiscreteDistributionstatic
DISCRETIZATION_EQUAL_PROB_WHEN_POSSIBLEbpp::ExponentialDiscreteDistributionstatic
discretizationScheme_bpp::ExponentialDiscreteDistributionprotected
discretize()bpp::ExponentialDiscreteDistributionvirtual
discretize()bpp::ExponentialDiscreteDistributionvirtual
discretizeEqualIntervals()bpp::ExponentialDiscreteDistributionprotected
discretizeEqualProportions()bpp::ExponentialDiscreteDistributionprotected
distribution_bpp::ExponentialDiscreteDistributionprotected
Expectation(double a) constbpp::ExponentialDiscreteDistributionvirtual
ExponentialDiscreteDistribution(size_t n, double lambda=1.)bpp::ExponentialDiscreteDistribution
ExponentialDiscreteDistribution(const ExponentialDiscreteDistribution &dist)bpp::ExponentialDiscreteDistribution
ExponentialDiscreteRateDistribution(size_t nbClasses)bpp::ExponentialDiscreteRateDistributioninline
fireParameterChanged(const ParameterList &parameters)bpp::ExponentialDiscreteDistributionvirtual
getAlias(const std::string &name) const=0bpp::ExponentialDiscreteDistributionpure virtual
getAlias(const std::string &name) constbpp::ExponentialDiscreteDistributionvirtual
getAliasedParameters(const ParameterList &pl) constbpp::ExponentialDiscreteDistribution
getAliases() const=0bpp::ExponentialDiscreteDistributionpure virtual
getAliases() constbpp::ExponentialDiscreteDistributionvirtual
getBound(size_t i) constbpp::ExponentialDiscreteDistributionvirtual
getBound(size_t i) constbpp::ExponentialDiscreteDistributionvirtual
getBounds() constbpp::ExponentialDiscreteDistributionvirtual
getBounds() constbpp::ExponentialDiscreteDistributionvirtual
getCategories() constbpp::ExponentialDiscreteDistributionvirtual
getCategories() constbpp::ExponentialDiscreteDistributionvirtual
getCategory(size_t categoryIndex) constbpp::ExponentialDiscreteDistributionvirtual
getCategory(size_t categoryIndex) constbpp::ExponentialDiscreteDistributionvirtual
getCategoryIndex(double value) constbpp::ExponentialDiscreteDistributionvirtual
getCategoryIndex(double value) constbpp::ExponentialDiscreteDistributionvirtual
getFrom(const std::string &name) constbpp::ExponentialDiscreteDistribution
getFromParameters(const ParameterList &pl) constbpp::ExponentialDiscreteDistribution
getIInfCumulativeProbability(double category) constbpp::ExponentialDiscreteDistributionvirtual
getIInfCumulativeProbability(double category) constbpp::ExponentialDiscreteDistributionvirtual
getIndependentParameters() const=0bpp::ExponentialDiscreteDistributionpure virtual
getIndependentParameters() constbpp::ExponentialDiscreteDistributionvirtual
getInfCumulativeProbability(double category) constbpp::ExponentialDiscreteDistributionvirtual
getInfCumulativeProbability(double category) constbpp::ExponentialDiscreteDistributionvirtual
getLowerBound() constbpp::ExponentialDiscreteDistributionvirtual
getLowerBound() constbpp::ExponentialDiscreteDistributionvirtual
getName() constbpp::ExponentialDiscreteDistributionvirtual
getNamespace() const=0bpp::ExponentialDiscreteDistributionpure virtual
getNamespace() const overridebpp::ExponentialDiscreteDistributionvirtual
getNumberOfCategories() constbpp::ExponentialDiscreteDistributionvirtual
getNumberOfCategories() constbpp::ExponentialDiscreteDistributionvirtual
getNumberOfIndependentParameters() const=0bpp::ExponentialDiscreteDistributionpure virtual
getNumberOfIndependentParameters() constbpp::ExponentialDiscreteDistributionvirtual
getNumberOfParameters() const=0bpp::ExponentialDiscreteDistributionpure virtual
getNumberOfParameters() const overridebpp::ExponentialDiscreteDistributionvirtual
getParameter(const std::string &name) constbpp::ExponentialDiscreteDistribution
getParameter(size_t i) constbpp::ExponentialDiscreteDistributionprotected
getParameter(size_t i)bpp::ExponentialDiscreteDistributionprotected
getParameter_(const std::string &name)bpp::ExponentialDiscreteDistributionprotected
getParameter_(size_t index)bpp::ExponentialDiscreteDistributionprotected
getParameter_(size_t index) constbpp::ExponentialDiscreteDistributionprotected
getParameterNameWithoutNamespace(const std::string &name) const=0bpp::ExponentialDiscreteDistributionpure virtual
getParameterNameWithoutNamespace(const std::string &name) const overridebpp::ExponentialDiscreteDistributionvirtual
getParameters() const=0bpp::ExponentialDiscreteDistributionpure virtual
getParameters() const overridebpp::ExponentialDiscreteDistributionvirtual
getParameters_()=0bpp::ExponentialDiscreteDistributionprotectedpure virtual
getParameters_() overridebpp::ExponentialDiscreteDistributionprotectedvirtual
getParameterValue(const std::string &name) const=0bpp::ExponentialDiscreteDistributionpure virtual
getParameterValue(const std::string &name) const overridebpp::ExponentialDiscreteDistributionvirtual
getParameterWithNamespace_(const std::string &name)bpp::ExponentialDiscreteDistributionprotected
getParameterWithNamespace_(const std::string &name) constbpp::ExponentialDiscreteDistributionprotected
getProbabilities() constbpp::ExponentialDiscreteDistributionvirtual
getProbabilities() constbpp::ExponentialDiscreteDistributionvirtual
getProbability(size_t categoryIndex) constbpp::ExponentialDiscreteDistributionvirtual
getProbability(double category) constbpp::ExponentialDiscreteDistributionvirtual
getProbability(size_t categoryIndex) constbpp::ExponentialDiscreteDistributionvirtual
getProbability(double category) constbpp::ExponentialDiscreteDistributionvirtual
getSSupCumulativeProbability(double category) constbpp::ExponentialDiscreteDistributionvirtual
getSSupCumulativeProbability(double category) constbpp::ExponentialDiscreteDistributionvirtual
getSupCumulativeProbability(double category) constbpp::ExponentialDiscreteDistributionvirtual
getSupCumulativeProbability(double category) constbpp::ExponentialDiscreteDistributionvirtual
getUpperBound() constbpp::ExponentialDiscreteDistributionvirtual
getUpperBound() constbpp::ExponentialDiscreteDistributionvirtual
getValueCategory(double value) constbpp::ExponentialDiscreteDistributionvirtual
getValueCategory(double value) constbpp::ExponentialDiscreteDistributionvirtual
hasIndependentParameter(const std::string &name) constbpp::ExponentialDiscreteDistribution
hasParameter(const std::string &name) const=0bpp::ExponentialDiscreteDistributionpure virtual
hasParameter(const std::string &name) const overridebpp::ExponentialDiscreteDistributionvirtual
includeParameters_(const ParameterList &parameters)bpp::ExponentialDiscreteDistributionprotectedvirtual
independentParameters_bpp::ExponentialDiscreteDistributionprivate
intMinMax_bpp::ExponentialDiscreteDistributionprotected
lambda_bpp::ExponentialDiscreteDistributionprotected
matchParametersValues(const ParameterList &parameters)=0bpp::ExponentialDiscreteDistributionpure virtual
matchParametersValues(const ParameterList &parameters) overridebpp::ExponentialDiscreteDistributionvirtual
median_bpp::ExponentialDiscreteDistributionprotected
numberOfCategories_bpp::ExponentialDiscreteDistributionprotected
operator=(const ExponentialDiscreteDistribution &dist)bpp::ExponentialDiscreteDistribution
bpp::AbstractDiscreteDistribution::operator=(const AbstractDiscreteDistribution &adde)bpp::AbstractDiscreteDistribution
bpp::AbstractParameterAliasable::operator=(const AbstractParameterAliasable &ap)bpp::AbstractParameterAliasable
parameter(const std::string &name) const=0bpp::ExponentialDiscreteDistributionpure virtual
parameter(const std::string &name) const overridebpp::ExponentialDiscreteDistributionvirtual
ParameterAliasable()bpp::ParameterAliasable
parameters_bpp::ExponentialDiscreteDistributionprivate
Parametrizable()bpp::Parametrizable
pProb(double x) constbpp::ExponentialDiscreteDistributionvirtual
precision() constbpp::ExponentialDiscreteDistribution
precision() constbpp::ExponentialDiscreteDistribution
prefix_bpp::ExponentialDiscreteDistributionprivate
print(OutputStream &out) constbpp::ExponentialDiscreteDistributionvirtual
print(OutputStream &out) constbpp::ExponentialDiscreteDistributionvirtual
qProb(double x) constbpp::ExponentialDiscreteDistributionvirtual
rand() constbpp::ExponentialDiscreteDistributionvirtual
rand() constbpp::ExponentialDiscreteDistributionvirtual
randC() constbpp::ExponentialDiscreteDistributionvirtual
removeConstraint(const std::string &name)=0bpp::ExponentialDiscreteDistributionpure virtual
removeConstraint(const std::string &name) overridebpp::ExponentialDiscreteDistributionvirtual
resetParameters_()bpp::ExponentialDiscreteDistributionprotected
restrictToConstraint(const ConstraintInterface &c)bpp::ExponentialDiscreteDistributionvirtual
set(double category, double probability)bpp::ExponentialDiscreteDistributionvirtual
set(double category, double probability)bpp::ExponentialDiscreteDistributionvirtual
setAllParametersValues(const ParameterList &parameters)=0bpp::ExponentialDiscreteDistributionpure virtual
setAllParametersValues(const ParameterList &parameters) overridebpp::ExponentialDiscreteDistributionvirtual
setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint)=0bpp::ExponentialDiscreteDistributionpure virtual
setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint) overridebpp::ExponentialDiscreteDistributionvirtual
setMedian(bool median)bpp::ExponentialDiscreteDistributionvirtual
setMedian(bool median)bpp::ExponentialDiscreteDistributionvirtual
setNamespace(const std::string &prefix)=0bpp::ExponentialDiscreteDistributionpure virtual
setNamespace(const std::string &prefix)bpp::ExponentialDiscreteDistributionvirtual
setNumberOfCategories(size_t nbClasses)bpp::ExponentialDiscreteDistributionvirtual
setNumberOfCategories(size_t nbClasses)bpp::ExponentialDiscreteDistributionvirtual
setParametersValues(const ParameterList &parameters)=0bpp::ExponentialDiscreteDistributionpure virtual
setParametersValues(const ParameterList &parameters) overridebpp::ExponentialDiscreteDistributionvirtual
setParameterValue(const std::string &name, double value)=0bpp::ExponentialDiscreteDistributionpure virtual
setParameterValue(const std::string &name, double value) overridebpp::ExponentialDiscreteDistributionvirtual
shareParameter_(const std::shared_ptr< Parameter > &parameter)bpp::ExponentialDiscreteDistributionprotectedvirtual
shareParameters_(const ParameterList &parameters)bpp::ExponentialDiscreteDistributionprotectedvirtual
strictLowerBound() constbpp::ExponentialDiscreteDistributionvirtual
strictLowerBound() constbpp::ExponentialDiscreteDistributionvirtual
strictUpperBound() constbpp::ExponentialDiscreteDistributionvirtual
strictUpperBound() constbpp::ExponentialDiscreteDistributionvirtual
unaliasParameters(const std::string &p1, const std::string &p2)=0bpp::ExponentialDiscreteDistributionpure virtual
unaliasParameters(const std::string &p1, const std::string &p2)bpp::ExponentialDiscreteDistributionvirtual
~AbstractDiscreteDistribution()bpp::AbstractDiscreteDistributionvirtual
~AbstractParameterAliasable()bpp::AbstractParameterAliasablevirtual
~AbstractParametrizable()bpp::AbstractParametrizablevirtual
~Clonable()=defaultbpp::Clonablevirtual
~DiscreteDistributionInterface()bpp::DiscreteDistributionInterfacevirtual
~ExponentialDiscreteDistribution()bpp::ExponentialDiscreteDistribution
~ParameterAliasable()bpp::ParameterAliasablevirtual
~Parametrizable()bpp::Parametrizablevirtual