bpp-phyl3  3.0.0
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bpp::GammaDiscreteRateDistribution Member List

This is the complete list of members for bpp::GammaDiscreteRateDistribution, including all inherited members.

AbstractDiscreteDistribution(size_t nbClasses, const std::string &prefix="", short discretization=DISCRETIZATION_EQUAL_PROB)bpp::AbstractDiscreteDistribution
AbstractDiscreteDistribution(size_t nbClasses, double precision, const std::string &prefix="", short discretization=DISCRETIZATION_EQUAL_PROB)bpp::AbstractDiscreteDistribution
AbstractDiscreteDistribution(const AbstractDiscreteDistribution &adde)bpp::AbstractDiscreteDistribution
AbstractParameterAliasable(const std::string &prefix)bpp::AbstractParameterAliasable
AbstractParameterAliasable(const AbstractParameterAliasable &ap)bpp::AbstractParameterAliasable
AbstractParametrizable(const std::string &prefix)bpp::AbstractParametrizable
add(double category, double probability)bpp::GammaDiscreteDistributionvirtual
add(double category, double probability)bpp::GammaDiscreteDistributionvirtual
addParameter_(Parameter *parameter)bpp::GammaDiscreteDistributionprotectedvirtual
addParameters_(const ParameterList &parameters)bpp::GammaDiscreteDistributionprotectedvirtual
aliasListenersRegister_bpp::GammaDiscreteDistributionprivate
aliasParameters(const std::string &p1, const std::string &p2)=0bpp::GammaDiscreteDistributionpure virtual
aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)=0bpp::GammaDiscreteDistributionpure virtual
aliasParameters(const std::string &p1, const std::string &p2)bpp::GammaDiscreteDistributionvirtual
aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)bpp::GammaDiscreteDistributionvirtual
alpha_bpp::GammaDiscreteDistributionprivate
beta_bpp::GammaDiscreteDistributionprivate
bounds_bpp::GammaDiscreteDistributionprotected
clone() constbpp::GammaDiscreteRateDistributioninlinevirtual
deleteParameter_(size_t index)bpp::GammaDiscreteDistributionprotectedvirtual
deleteParameter_(std::string &name)bpp::GammaDiscreteDistributionprotectedvirtual
deleteParameters_(const std::vector< std::string > &names)bpp::GammaDiscreteDistributionprotectedvirtual
DiscreteDistributionInterface()bpp::DiscreteDistributionInterface
DISCRETIZATION_EQUAL_INTERVALbpp::GammaDiscreteDistributionstatic
DISCRETIZATION_EQUAL_PROBbpp::GammaDiscreteDistributionstatic
DISCRETIZATION_EQUAL_PROB_WHEN_POSSIBLEbpp::GammaDiscreteDistributionstatic
discretizationScheme_bpp::GammaDiscreteDistributionprotected
discretize()bpp::GammaDiscreteDistributionvirtual
discretize()bpp::GammaDiscreteDistributionvirtual
discretizeEqualIntervals()bpp::GammaDiscreteDistributionprotected
discretizeEqualProportions()bpp::GammaDiscreteDistributionprotected
distribution_bpp::GammaDiscreteDistributionprotected
Expectation(double a) constbpp::GammaDiscreteDistributionvirtual
fireParameterChanged(const ParameterList &parameters)bpp::GammaDiscreteDistributionvirtual
ga1_bpp::GammaDiscreteDistributionprivate
GammaDiscreteDistribution(size_t n, double alpha=1., double beta=1., double minimumAlpha=0.05, double minimumBeta=0.05, bool paramOffset=false, double offset=0)bpp::GammaDiscreteDistribution
GammaDiscreteDistribution(const GammaDiscreteDistribution &)bpp::GammaDiscreteDistribution
GammaDiscreteRateDistribution(size_t nbClasses, double alpha=1.)bpp::GammaDiscreteRateDistributioninline
getAlias(const std::string &name) const=0bpp::GammaDiscreteDistributionpure virtual
getAlias(const std::string &name) constbpp::GammaDiscreteDistributionvirtual
getAliasedParameters(const ParameterList &pl) constbpp::GammaDiscreteDistribution
getAliases() const=0bpp::GammaDiscreteDistributionpure virtual
getAliases() constbpp::GammaDiscreteDistributionvirtual
getBound(size_t i) constbpp::GammaDiscreteDistributionvirtual
getBound(size_t i) constbpp::GammaDiscreteDistributionvirtual
getBounds() constbpp::GammaDiscreteDistributionvirtual
getBounds() constbpp::GammaDiscreteDistributionvirtual
getCategories() constbpp::GammaDiscreteDistributionvirtual
getCategories() constbpp::GammaDiscreteDistributionvirtual
getCategory(size_t categoryIndex) constbpp::GammaDiscreteDistributionvirtual
getCategory(size_t categoryIndex) constbpp::GammaDiscreteDistributionvirtual
getCategoryIndex(double value) constbpp::GammaDiscreteDistributionvirtual
getCategoryIndex(double value) constbpp::GammaDiscreteDistributionvirtual
getFrom(const std::string &name) constbpp::GammaDiscreteDistribution
getFromParameters(const ParameterList &pl) constbpp::GammaDiscreteDistribution
getIInfCumulativeProbability(double category) constbpp::GammaDiscreteDistributionvirtual
getIInfCumulativeProbability(double category) constbpp::GammaDiscreteDistributionvirtual
getIndependentParameters() const=0bpp::GammaDiscreteDistributionpure virtual
getIndependentParameters() constbpp::GammaDiscreteDistributionvirtual
getInfCumulativeProbability(double category) constbpp::GammaDiscreteDistributionvirtual
getInfCumulativeProbability(double category) constbpp::GammaDiscreteDistributionvirtual
getLowerBound() constbpp::GammaDiscreteDistributionvirtual
getLowerBound() constbpp::GammaDiscreteDistributionvirtual
getName() constbpp::GammaDiscreteDistributionvirtual
getNamespace() const=0bpp::GammaDiscreteDistributionpure virtual
getNamespace() const overridebpp::GammaDiscreteDistributionvirtual
getNumberOfCategories() constbpp::GammaDiscreteDistributionvirtual
getNumberOfCategories() constbpp::GammaDiscreteDistributionvirtual
getNumberOfIndependentParameters() const=0bpp::GammaDiscreteDistributionpure virtual
getNumberOfIndependentParameters() constbpp::GammaDiscreteDistributionvirtual
getNumberOfParameters() const=0bpp::GammaDiscreteDistributionpure virtual
getNumberOfParameters() const overridebpp::GammaDiscreteDistributionvirtual
getParameter(const std::string &name) constbpp::GammaDiscreteDistribution
getParameter(size_t i) constbpp::GammaDiscreteDistributionprotected
getParameter(size_t i)bpp::GammaDiscreteDistributionprotected
getParameter_(const std::string &name)bpp::GammaDiscreteDistributionprotected
getParameter_(size_t index)bpp::GammaDiscreteDistributionprotected
getParameter_(size_t index) constbpp::GammaDiscreteDistributionprotected
getParameterNameWithoutNamespace(const std::string &name) const=0bpp::GammaDiscreteDistributionpure virtual
getParameterNameWithoutNamespace(const std::string &name) const overridebpp::GammaDiscreteDistributionvirtual
getParameters() const=0bpp::GammaDiscreteDistributionpure virtual
getParameters() const overridebpp::GammaDiscreteDistributionvirtual
getParameters_()=0bpp::GammaDiscreteDistributionprotectedpure virtual
getParameters_() overridebpp::GammaDiscreteDistributionprotectedvirtual
getParameterValue(const std::string &name) const=0bpp::GammaDiscreteDistributionpure virtual
getParameterValue(const std::string &name) const overridebpp::GammaDiscreteDistributionvirtual
getParameterWithNamespace_(const std::string &name)bpp::GammaDiscreteDistributionprotected
getParameterWithNamespace_(const std::string &name) constbpp::GammaDiscreteDistributionprotected
getProbabilities() constbpp::GammaDiscreteDistributionvirtual
getProbabilities() constbpp::GammaDiscreteDistributionvirtual
getProbability(size_t categoryIndex) constbpp::GammaDiscreteDistributionvirtual
getProbability(double category) constbpp::GammaDiscreteDistributionvirtual
getProbability(size_t categoryIndex) constbpp::GammaDiscreteDistributionvirtual
getProbability(double category) constbpp::GammaDiscreteDistributionvirtual
getSSupCumulativeProbability(double category) constbpp::GammaDiscreteDistributionvirtual
getSSupCumulativeProbability(double category) constbpp::GammaDiscreteDistributionvirtual
getSupCumulativeProbability(double category) constbpp::GammaDiscreteDistributionvirtual
getSupCumulativeProbability(double category) constbpp::GammaDiscreteDistributionvirtual
getUpperBound() constbpp::GammaDiscreteDistributionvirtual
getUpperBound() constbpp::GammaDiscreteDistributionvirtual
getValueCategory(double value) constbpp::GammaDiscreteDistributionvirtual
getValueCategory(double value) constbpp::GammaDiscreteDistributionvirtual
hasIndependentParameter(const std::string &name) constbpp::GammaDiscreteDistribution
hasParameter(const std::string &name) const=0bpp::GammaDiscreteDistributionpure virtual
hasParameter(const std::string &name) const overridebpp::GammaDiscreteDistributionvirtual
includeParameters_(const ParameterList &parameters)bpp::GammaDiscreteDistributionprotectedvirtual
independentParameters_bpp::GammaDiscreteDistributionprivate
intMinMax_bpp::GammaDiscreteDistributionprotected
matchParametersValues(const ParameterList &parameters)=0bpp::GammaDiscreteDistributionpure virtual
matchParametersValues(const ParameterList &parameters) overridebpp::GammaDiscreteDistributionvirtual
median_bpp::GammaDiscreteDistributionprotected
numberOfCategories_bpp::GammaDiscreteDistributionprotected
offset_bpp::GammaDiscreteDistributionprivate
operator=(const GammaDiscreteDistribution &)bpp::GammaDiscreteDistribution
bpp::AbstractDiscreteDistribution::operator=(const AbstractDiscreteDistribution &adde)bpp::AbstractDiscreteDistribution
bpp::AbstractParameterAliasable::operator=(const AbstractParameterAliasable &ap)bpp::AbstractParameterAliasable
parameter(const std::string &name) const=0bpp::GammaDiscreteDistributionpure virtual
parameter(const std::string &name) const overridebpp::GammaDiscreteDistributionvirtual
ParameterAliasable()bpp::ParameterAliasable
parameters_bpp::GammaDiscreteDistributionprivate
Parametrizable()bpp::Parametrizable
pProb(double x) constbpp::GammaDiscreteDistributionvirtual
precision() constbpp::GammaDiscreteDistribution
precision() constbpp::GammaDiscreteDistribution
prefix_bpp::GammaDiscreteDistributionprivate
print(OutputStream &out) constbpp::GammaDiscreteDistributionvirtual
print(OutputStream &out) constbpp::GammaDiscreteDistributionvirtual
qProb(double x) constbpp::GammaDiscreteDistributionvirtual
rand() constbpp::GammaDiscreteDistributionvirtual
rand() constbpp::GammaDiscreteDistributionvirtual
randC() constbpp::GammaDiscreteDistributionvirtual
removeConstraint(const std::string &name)=0bpp::GammaDiscreteDistributionpure virtual
removeConstraint(const std::string &name) overridebpp::GammaDiscreteDistributionvirtual
resetParameters_()bpp::GammaDiscreteDistributionprotected
restrictToConstraint(const ConstraintInterface &c)bpp::GammaDiscreteDistributionvirtual
set(double category, double probability)bpp::GammaDiscreteDistributionvirtual
set(double category, double probability)bpp::GammaDiscreteDistributionvirtual
setAllParametersValues(const ParameterList &parameters)=0bpp::GammaDiscreteDistributionpure virtual
setAllParametersValues(const ParameterList &parameters) overridebpp::GammaDiscreteDistributionvirtual
setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint)=0bpp::GammaDiscreteDistributionpure virtual
setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint) overridebpp::GammaDiscreteDistributionvirtual
setMedian(bool median)bpp::GammaDiscreteDistributionvirtual
setMedian(bool median)bpp::GammaDiscreteDistributionvirtual
setNamespace(const std::string &prefix)=0bpp::GammaDiscreteDistributionpure virtual
setNamespace(const std::string &prefix)bpp::GammaDiscreteDistributionvirtual
setNumberOfCategories(size_t nbClasses)bpp::GammaDiscreteDistributionvirtual
setNumberOfCategories(size_t nbClasses)bpp::GammaDiscreteDistributionvirtual
setParametersValues(const ParameterList &parameters)=0bpp::GammaDiscreteDistributionpure virtual
setParametersValues(const ParameterList &parameters) overridebpp::GammaDiscreteDistributionvirtual
setParameterValue(const std::string &name, double value)=0bpp::GammaDiscreteDistributionpure virtual
setParameterValue(const std::string &name, double value) overridebpp::GammaDiscreteDistributionvirtual
shareParameter_(const std::shared_ptr< Parameter > &parameter)bpp::GammaDiscreteDistributionprotectedvirtual
shareParameters_(const ParameterList &parameters)bpp::GammaDiscreteDistributionprotectedvirtual
strictLowerBound() constbpp::GammaDiscreteDistributionvirtual
strictLowerBound() constbpp::GammaDiscreteDistributionvirtual
strictUpperBound() constbpp::GammaDiscreteDistributionvirtual
strictUpperBound() constbpp::GammaDiscreteDistributionvirtual
unaliasParameters(const std::string &p1, const std::string &p2)=0bpp::GammaDiscreteDistributionpure virtual
unaliasParameters(const std::string &p1, const std::string &p2)bpp::GammaDiscreteDistributionvirtual
~AbstractDiscreteDistribution()bpp::AbstractDiscreteDistributionvirtual
~AbstractParameterAliasable()bpp::AbstractParameterAliasablevirtual
~AbstractParametrizable()bpp::AbstractParametrizablevirtual
~Clonable()=defaultbpp::Clonablevirtual
~DiscreteDistributionInterface()bpp::DiscreteDistributionInterfacevirtual
~GammaDiscreteDistribution()bpp::GammaDiscreteDistributionvirtual
~ParameterAliasable()bpp::ParameterAliasablevirtual
~Parametrizable()bpp::Parametrizablevirtual