bpp-phyl3  3.0.0
bpp::GaussianDiscreteRateDistribution Member List

This is the complete list of members for bpp::GaussianDiscreteRateDistribution, including all inherited members.

AbstractDiscreteDistribution(size_t nbClasses, const std::string &prefix="", short discretization=DISCRETIZATION_EQUAL_PROB)bpp::AbstractDiscreteDistribution
AbstractDiscreteDistribution(size_t nbClasses, double precision, const std::string &prefix="", short discretization=DISCRETIZATION_EQUAL_PROB)bpp::AbstractDiscreteDistribution
AbstractDiscreteDistribution(const AbstractDiscreteDistribution &adde)bpp::AbstractDiscreteDistribution
AbstractParameterAliasable(const std::string &prefix)bpp::AbstractParameterAliasable
AbstractParameterAliasable(const AbstractParameterAliasable &ap)bpp::AbstractParameterAliasable
AbstractParametrizable(const std::string &prefix)bpp::AbstractParametrizable
add(double category, double probability)bpp::GaussianDiscreteDistributionvirtual
add(double category, double probability)bpp::GaussianDiscreteDistributionvirtual
addParameter_(Parameter *parameter)bpp::GaussianDiscreteDistributionprotectedvirtual
addParameters_(const ParameterList &parameters)bpp::GaussianDiscreteDistributionprotectedvirtual
aliasListenersRegister_bpp::GaussianDiscreteDistributionprivate
aliasParameters(const std::string &p1, const std::string &p2)=0bpp::GaussianDiscreteDistributionpure virtual
aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)=0bpp::GaussianDiscreteDistributionpure virtual
aliasParameters(const std::string &p1, const std::string &p2)bpp::GaussianDiscreteDistributionvirtual
aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)bpp::GaussianDiscreteDistributionvirtual
bounds_bpp::GaussianDiscreteDistributionprotected
clone() constbpp::GaussianDiscreteRateDistributioninlinevirtual
deleteParameter_(size_t index)bpp::GaussianDiscreteDistributionprotectedvirtual
deleteParameter_(std::string &name)bpp::GaussianDiscreteDistributionprotectedvirtual
deleteParameters_(const std::vector< std::string > &names)bpp::GaussianDiscreteDistributionprotectedvirtual
DiscreteDistributionInterface()bpp::DiscreteDistributionInterface
DISCRETIZATION_EQUAL_INTERVALbpp::GaussianDiscreteDistributionstatic
DISCRETIZATION_EQUAL_PROBbpp::GaussianDiscreteDistributionstatic
DISCRETIZATION_EQUAL_PROB_WHEN_POSSIBLEbpp::GaussianDiscreteDistributionstatic
discretizationScheme_bpp::GaussianDiscreteDistributionprotected
discretize()bpp::GaussianDiscreteDistributionvirtual
discretize()bpp::GaussianDiscreteDistributionvirtual
discretizeEqualIntervals()bpp::GaussianDiscreteDistributionprotected
discretizeEqualProportions()bpp::GaussianDiscreteDistributionprotected
distribution_bpp::GaussianDiscreteDistributionprotected
Expectation(double a) constbpp::GaussianDiscreteDistributionvirtual
fireParameterChanged(const ParameterList &parameters)bpp::GaussianDiscreteDistributionvirtual
GaussianDiscreteDistribution(size_t n, double mu=0., double sigma=1.)bpp::GaussianDiscreteDistribution
GaussianDiscreteDistribution(const GaussianDiscreteDistribution &)bpp::GaussianDiscreteDistribution
GaussianDiscreteRateDistribution(size_t nbClasses, double sigma)bpp::GaussianDiscreteRateDistributioninline
getAlias(const std::string &name) const=0bpp::GaussianDiscreteDistributionpure virtual
getAlias(const std::string &name) constbpp::GaussianDiscreteDistributionvirtual
getAliasedParameters(const ParameterList &pl) constbpp::GaussianDiscreteDistribution
getAliases() const=0bpp::GaussianDiscreteDistributionpure virtual
getAliases() constbpp::GaussianDiscreteDistributionvirtual
getBound(size_t i) constbpp::GaussianDiscreteDistributionvirtual
getBound(size_t i) constbpp::GaussianDiscreteDistributionvirtual
getBounds() constbpp::GaussianDiscreteDistributionvirtual
getBounds() constbpp::GaussianDiscreteDistributionvirtual
getCategories() constbpp::GaussianDiscreteDistributionvirtual
getCategories() constbpp::GaussianDiscreteDistributionvirtual
getCategory(size_t categoryIndex) constbpp::GaussianDiscreteDistributionvirtual
getCategory(size_t categoryIndex) constbpp::GaussianDiscreteDistributionvirtual
getCategoryIndex(double value) constbpp::GaussianDiscreteDistributionvirtual
getCategoryIndex(double value) constbpp::GaussianDiscreteDistributionvirtual
getFrom(const std::string &name) constbpp::GaussianDiscreteDistribution
getFromParameters(const ParameterList &pl) constbpp::GaussianDiscreteDistribution
getIInfCumulativeProbability(double category) constbpp::GaussianDiscreteDistributionvirtual
getIInfCumulativeProbability(double category) constbpp::GaussianDiscreteDistributionvirtual
getIndependentParameters() const=0bpp::GaussianDiscreteDistributionpure virtual
getIndependentParameters() constbpp::GaussianDiscreteDistributionvirtual
getInfCumulativeProbability(double category) constbpp::GaussianDiscreteDistributionvirtual
getInfCumulativeProbability(double category) constbpp::GaussianDiscreteDistributionvirtual
getLowerBound() constbpp::GaussianDiscreteDistributionvirtual
getLowerBound() constbpp::GaussianDiscreteDistributionvirtual
getName() constbpp::GaussianDiscreteDistributionvirtual
getNamespace() const=0bpp::GaussianDiscreteDistributionpure virtual
getNamespace() const overridebpp::GaussianDiscreteDistributionvirtual
getNumberOfCategories() constbpp::GaussianDiscreteDistributionvirtual
getNumberOfCategories() constbpp::GaussianDiscreteDistributionvirtual
getNumberOfIndependentParameters() const=0bpp::GaussianDiscreteDistributionpure virtual
getNumberOfIndependentParameters() constbpp::GaussianDiscreteDistributionvirtual
getNumberOfParameters() const=0bpp::GaussianDiscreteDistributionpure virtual
getNumberOfParameters() const overridebpp::GaussianDiscreteDistributionvirtual
getParameter(const std::string &name) constbpp::GaussianDiscreteDistribution
getParameter(size_t i) constbpp::GaussianDiscreteDistributionprotected
getParameter(size_t i)bpp::GaussianDiscreteDistributionprotected
getParameter_(const std::string &name)bpp::GaussianDiscreteDistributionprotected
getParameter_(size_t index)bpp::GaussianDiscreteDistributionprotected
getParameter_(size_t index) constbpp::GaussianDiscreteDistributionprotected
getParameterNameWithoutNamespace(const std::string &name) const=0bpp::GaussianDiscreteDistributionpure virtual
getParameterNameWithoutNamespace(const std::string &name) const overridebpp::GaussianDiscreteDistributionvirtual
getParameters() const=0bpp::GaussianDiscreteDistributionpure virtual
getParameters() const overridebpp::GaussianDiscreteDistributionvirtual
getParameters_()=0bpp::GaussianDiscreteDistributionprotectedpure virtual
getParameters_() overridebpp::GaussianDiscreteDistributionprotectedvirtual
getParameterValue(const std::string &name) const=0bpp::GaussianDiscreteDistributionpure virtual
getParameterValue(const std::string &name) const overridebpp::GaussianDiscreteDistributionvirtual
getParameterWithNamespace_(const std::string &name)bpp::GaussianDiscreteDistributionprotected
getParameterWithNamespace_(const std::string &name) constbpp::GaussianDiscreteDistributionprotected
getProbabilities() constbpp::GaussianDiscreteDistributionvirtual
getProbabilities() constbpp::GaussianDiscreteDistributionvirtual
getProbability(size_t categoryIndex) constbpp::GaussianDiscreteDistributionvirtual
getProbability(double category) constbpp::GaussianDiscreteDistributionvirtual
getProbability(size_t categoryIndex) constbpp::GaussianDiscreteDistributionvirtual
getProbability(double category) constbpp::GaussianDiscreteDistributionvirtual
getSSupCumulativeProbability(double category) constbpp::GaussianDiscreteDistributionvirtual
getSSupCumulativeProbability(double category) constbpp::GaussianDiscreteDistributionvirtual
getSupCumulativeProbability(double category) constbpp::GaussianDiscreteDistributionvirtual
getSupCumulativeProbability(double category) constbpp::GaussianDiscreteDistributionvirtual
getUpperBound() constbpp::GaussianDiscreteDistributionvirtual
getUpperBound() constbpp::GaussianDiscreteDistributionvirtual
getValueCategory(double value) constbpp::GaussianDiscreteDistributionvirtual
getValueCategory(double value) constbpp::GaussianDiscreteDistributionvirtual
hasIndependentParameter(const std::string &name) constbpp::GaussianDiscreteDistribution
hasParameter(const std::string &name) const=0bpp::GaussianDiscreteDistributionpure virtual
hasParameter(const std::string &name) const overridebpp::GaussianDiscreteDistributionvirtual
includeParameters_(const ParameterList &parameters)bpp::GaussianDiscreteDistributionprotectedvirtual
independentParameters_bpp::GaussianDiscreteDistributionprivate
intMinMax_bpp::GaussianDiscreteDistributionprotected
matchParametersValues(const ParameterList &parameters)=0bpp::GaussianDiscreteDistributionpure virtual
matchParametersValues(const ParameterList &parameters) overridebpp::GaussianDiscreteDistributionvirtual
median_bpp::GaussianDiscreteDistributionprotected
mu_bpp::GaussianDiscreteDistributionprivate
numberOfCategories_bpp::GaussianDiscreteDistributionprotected
operator=(const GaussianDiscreteDistribution &)bpp::GaussianDiscreteDistribution
bpp::AbstractDiscreteDistribution::operator=(const AbstractDiscreteDistribution &adde)bpp::AbstractDiscreteDistribution
bpp::AbstractParameterAliasable::operator=(const AbstractParameterAliasable &ap)bpp::AbstractParameterAliasable
parameter(const std::string &name) const=0bpp::GaussianDiscreteDistributionpure virtual
parameter(const std::string &name) const overridebpp::GaussianDiscreteDistributionvirtual
ParameterAliasable()bpp::ParameterAliasable
parameters_bpp::GaussianDiscreteDistributionprivate
Parametrizable()bpp::Parametrizable
pProb(double x) constbpp::GaussianDiscreteDistributionvirtual
precision() constbpp::GaussianDiscreteDistribution
precision() constbpp::GaussianDiscreteDistribution
prefix_bpp::GaussianDiscreteDistributionprivate
print(OutputStream &out) constbpp::GaussianDiscreteDistributionvirtual
print(OutputStream &out) constbpp::GaussianDiscreteDistributionvirtual
qProb(double x) constbpp::GaussianDiscreteDistributionvirtual
rand() constbpp::GaussianDiscreteDistributionvirtual
rand() constbpp::GaussianDiscreteDistributionvirtual
randC() constbpp::GaussianDiscreteDistributionvirtual
removeConstraint(const std::string &name)=0bpp::GaussianDiscreteDistributionpure virtual
removeConstraint(const std::string &name) overridebpp::GaussianDiscreteDistributionvirtual
resetParameters_()bpp::GaussianDiscreteDistributionprotected
restrictToConstraint(const ConstraintInterface &c)bpp::GaussianDiscreteDistributionvirtual
set(double category, double probability)bpp::GaussianDiscreteDistributionvirtual
set(double category, double probability)bpp::GaussianDiscreteDistributionvirtual
setAllParametersValues(const ParameterList &parameters)=0bpp::GaussianDiscreteDistributionpure virtual
setAllParametersValues(const ParameterList &parameters) overridebpp::GaussianDiscreteDistributionvirtual
setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint)=0bpp::GaussianDiscreteDistributionpure virtual
setConstraint(const std::string &name, std::shared_ptr< ConstraintInterface > constraint) overridebpp::GaussianDiscreteDistributionvirtual
setMedian(bool median)bpp::GaussianDiscreteDistributionvirtual
setMedian(bool median)bpp::GaussianDiscreteDistributionvirtual
setNamespace(const std::string &prefix)=0bpp::GaussianDiscreteDistributionpure virtual
setNamespace(const std::string &prefix)bpp::GaussianDiscreteDistributionvirtual
setNumberOfCategories(size_t nbClasses)bpp::GaussianDiscreteDistributionvirtual
setNumberOfCategories(size_t nbClasses)bpp::GaussianDiscreteDistributionvirtual
setParametersValues(const ParameterList &parameters)=0bpp::GaussianDiscreteDistributionpure virtual
setParametersValues(const ParameterList &parameters) overridebpp::GaussianDiscreteDistributionvirtual
setParameterValue(const std::string &name, double value)=0bpp::GaussianDiscreteDistributionpure virtual
setParameterValue(const std::string &name, double value) overridebpp::GaussianDiscreteDistributionvirtual
shareParameter_(const std::shared_ptr< Parameter > &parameter)bpp::GaussianDiscreteDistributionprotectedvirtual
shareParameters_(const ParameterList &parameters)bpp::GaussianDiscreteDistributionprotectedvirtual
sigma_bpp::GaussianDiscreteDistributionprivate
strictLowerBound() constbpp::GaussianDiscreteDistributionvirtual
strictLowerBound() constbpp::GaussianDiscreteDistributionvirtual
strictUpperBound() constbpp::GaussianDiscreteDistributionvirtual
strictUpperBound() constbpp::GaussianDiscreteDistributionvirtual
unaliasParameters(const std::string &p1, const std::string &p2)=0bpp::GaussianDiscreteDistributionpure virtual
unaliasParameters(const std::string &p1, const std::string &p2)bpp::GaussianDiscreteDistributionvirtual
~AbstractDiscreteDistribution()bpp::AbstractDiscreteDistributionvirtual
~AbstractParameterAliasable()bpp::AbstractParameterAliasablevirtual
~AbstractParametrizable()bpp::AbstractParametrizablevirtual
~Clonable()=defaultbpp::Clonablevirtual
~DiscreteDistributionInterface()bpp::DiscreteDistributionInterfacevirtual
~GaussianDiscreteDistribution()bpp::GaussianDiscreteDistributionvirtual
~ParameterAliasable()bpp::ParameterAliasablevirtual
~Parametrizable()bpp::Parametrizablevirtual