AbstractSubstitutionCount(std::shared_ptr< const SubstitutionRegisterInterface > reg) | bpp::AbstractSubstitutionCount | inline |
clone() const override | bpp::LabelSubstitutionCount | inlinevirtual |
getAllNumbersOfSubstitutions(double length, size_t type=1) const override | bpp::LabelSubstitutionCount | inlinevirtual |
getAlphabet() const | bpp::SubstitutionCountInterface | inlinevirtual |
getNumberOfStates() const | bpp::SubstitutionCountInterface | inlinevirtual |
getNumberOfSubstitutions(size_t initialState, size_t finalState, double length, size_t type=1) const override | bpp::LabelSubstitutionCount | inlinevirtual |
getNumberOfSubstitutionsPerType(size_t initialState, size_t finalState, double length) const override | bpp::LabelSubstitutionCount | inlinevirtual |
getNumberOfSubstitutionTypes() const | bpp::SubstitutionCountInterface | inlinevirtual |
getSubstitutionRegister() const | bpp::AbstractSubstitutionCount | inlinevirtual |
hasSubstitutionRegister() const | bpp::AbstractSubstitutionCount | inlinevirtual |
label_ | bpp::LabelSubstitutionCount | private |
LabelSubstitutionCount(std::shared_ptr< const SubstitutionModelInterface > model) | bpp::LabelSubstitutionCount | |
LabelSubstitutionCount(std::shared_ptr< const StateMapInterface > statemap) | bpp::LabelSubstitutionCount | |
register_ | bpp::AbstractSubstitutionCount | protected |
setSubstitutionModel(std::shared_ptr< const SubstitutionModelInterface > model) override | bpp::LabelSubstitutionCount | inlinevirtual |
setSubstitutionRegister(std::shared_ptr< const SubstitutionRegisterInterface > reg) override | bpp::LabelSubstitutionCount | inlinevirtual |
storeAllNumbersOfSubstitutions(double length, size_t type, Eigen::MatrixXd &mat) const override | bpp::LabelSubstitutionCount | inlinevirtual |
SubstitutionCountInterface() | bpp::SubstitutionCountInterface | inline |
substitutionRegisterHasChanged() override | bpp::LabelSubstitutionCount | inlineprivatevirtual |
supportedChars_ | bpp::LabelSubstitutionCount | private |
~AbstractSubstitutionCount() | bpp::AbstractSubstitutionCount | inlinevirtual |
~Clonable()=default | bpp::Clonable | virtual |
~LabelSubstitutionCount() | bpp::LabelSubstitutionCount | inlinevirtual |
~SubstitutionCountInterface() | bpp::SubstitutionCountInterface | inlinevirtual |