bpp-phyl3  3.0.0
bpp::LabelSubstitutionCount Member List

This is the complete list of members for bpp::LabelSubstitutionCount, including all inherited members.

AbstractSubstitutionCount(std::shared_ptr< const SubstitutionRegisterInterface > reg)bpp::AbstractSubstitutionCountinline
clone() const overridebpp::LabelSubstitutionCountinlinevirtual
getAllNumbersOfSubstitutions(double length, size_t type=1) const overridebpp::LabelSubstitutionCountinlinevirtual
getAlphabet() constbpp::SubstitutionCountInterfaceinlinevirtual
getNumberOfStates() constbpp::SubstitutionCountInterfaceinlinevirtual
getNumberOfSubstitutions(size_t initialState, size_t finalState, double length, size_t type=1) const overridebpp::LabelSubstitutionCountinlinevirtual
getNumberOfSubstitutionsPerType(size_t initialState, size_t finalState, double length) const overridebpp::LabelSubstitutionCountinlinevirtual
getNumberOfSubstitutionTypes() constbpp::SubstitutionCountInterfaceinlinevirtual
getSubstitutionRegister() constbpp::AbstractSubstitutionCountinlinevirtual
hasSubstitutionRegister() constbpp::AbstractSubstitutionCountinlinevirtual
label_bpp::LabelSubstitutionCountprivate
LabelSubstitutionCount(std::shared_ptr< const SubstitutionModelInterface > model)bpp::LabelSubstitutionCount
LabelSubstitutionCount(std::shared_ptr< const StateMapInterface > statemap)bpp::LabelSubstitutionCount
register_bpp::AbstractSubstitutionCountprotected
setSubstitutionModel(std::shared_ptr< const SubstitutionModelInterface > model) overridebpp::LabelSubstitutionCountinlinevirtual
setSubstitutionRegister(std::shared_ptr< const SubstitutionRegisterInterface > reg) overridebpp::LabelSubstitutionCountinlinevirtual
storeAllNumbersOfSubstitutions(double length, size_t type, Eigen::MatrixXd &mat) const overridebpp::LabelSubstitutionCountinlinevirtual
SubstitutionCountInterface()bpp::SubstitutionCountInterfaceinline
substitutionRegisterHasChanged() overridebpp::LabelSubstitutionCountinlineprivatevirtual
supportedChars_bpp::LabelSubstitutionCountprivate
~AbstractSubstitutionCount()bpp::AbstractSubstitutionCountinlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~LabelSubstitutionCount()bpp::LabelSubstitutionCountinlinevirtual
~SubstitutionCountInterface()bpp::SubstitutionCountInterfaceinlinevirtual