bpp::LaplaceSubstitutionCount Member List

This is the complete list of members for bpp::LaplaceSubstitutionCount, including all inherited members.

AbstractSubstitutionCount(std::shared_ptr< const SubstitutionRegisterInterface > reg)	bpp::AbstractSubstitutionCount	inline
clone() const override	bpp::LaplaceSubstitutionCount	inlinevirtual
computeCounts(double length) const	bpp::LaplaceSubstitutionCount	protected
currentLength_	bpp::LaplaceSubstitutionCount	mutableprivate
cutOff_	bpp::LaplaceSubstitutionCount	private
getAllNumbersOfSubstitutions(double length, size_t type=1) const override	bpp::LaplaceSubstitutionCount	virtual
getAlphabet() const	bpp::SubstitutionCountInterface	inlinevirtual
getNumberOfStates() const	bpp::SubstitutionCountInterface	inlinevirtual
getNumberOfSubstitutions(size_t initialState, size_t finalState, double length, size_t type=1) const override	bpp::LaplaceSubstitutionCount	virtual
getNumberOfSubstitutionsPerType(size_t initialState, size_t finalState, double length) const override	bpp::LaplaceSubstitutionCount	inlinevirtual
getNumberOfSubstitutionTypes() const	bpp::SubstitutionCountInterface	inlinevirtual
getSubstitutionRegister() const	bpp::AbstractSubstitutionCount	inlinevirtual
hasSubstitutionRegister() const	bpp::AbstractSubstitutionCount	inlinevirtual
LaplaceSubstitutionCount(std::shared_ptr< const SubstitutionModelInterface > model, size_t cutOff)	bpp::LaplaceSubstitutionCount	inline
LaplaceSubstitutionCount(std::shared_ptr< const StateMapInterface > stateMap, size_t cutOff)	bpp::LaplaceSubstitutionCount	inline
LaplaceSubstitutionCount(const LaplaceSubstitutionCount &asc)	bpp::LaplaceSubstitutionCount	inline
m_	bpp::LaplaceSubstitutionCount	mutableprivate
model_	bpp::LaplaceSubstitutionCount	private
operator=(const LaplaceSubstitutionCount &asc)	bpp::LaplaceSubstitutionCount	inline
register_	bpp::AbstractSubstitutionCount	protected
setSubstitutionModel(std::shared_ptr< const SubstitutionModelInterface > model) override	bpp::LaplaceSubstitutionCount	virtual
setSubstitutionRegister(std::shared_ptr< const SubstitutionRegisterInterface > reg) override	bpp::LaplaceSubstitutionCount	inlinevirtual
storeAllNumbersOfSubstitutions(double length, size_t type, Eigen::MatrixXd &mat) const override	bpp::LaplaceSubstitutionCount	virtual
SubstitutionCountInterface()	bpp::SubstitutionCountInterface	inline
substitutionRegisterHasChanged() override	bpp::LaplaceSubstitutionCount	inlineprotectedvirtual
~AbstractSubstitutionCount()	bpp::AbstractSubstitutionCount	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~LaplaceSubstitutionCount()	bpp::LaplaceSubstitutionCount	inlinevirtual
~SubstitutionCountInterface()	bpp::SubstitutionCountInterface	inlinevirtual