bpp-phyl3  3.0.0
bpp::LegacyProbabilisticRewardMapping Member List

This is the complete list of members for bpp::LegacyProbabilisticRewardMapping, including all inherited members.

clone() const overridebpp::LegacyProbabilisticRewardMappinginlinevirtual
bpp::getBranchLengths() const =0bpp::LegacyMappingInterfacepure virtual
bpp::LegacyAbstractMapping::getBranchLengths() const overridebpp::LegacyAbstractMappinginlinevirtual
getNode(size_t nodeIndex) constbpp::LegacyAbstractMappinginlinevirtual
bpp::getNodeIndex(int nodeId) const =0bpp::LegacyMappingInterfacepure virtual
bpp::LegacyAbstractMapping::getNodeIndex(int nodeId) const overridebpp::LegacyAbstractMappinginlinevirtual
bpp::getNumberOfBranches() const =0bpp::LegacyMappingInterfacepure virtual
bpp::LegacyAbstractMapping::getNumberOfBranches() const overridebpp::LegacyAbstractMappinginlinevirtual
bpp::getNumberOfSites() const =0bpp::LegacyMappingInterfacepure virtual
bpp::LegacyAbstractMapping::getNumberOfSites() const overridebpp::LegacyAbstractMappinginlinevirtual
getReward(int nodeId, size_t siteIndex) constbpp::LegacyProbabilisticRewardMappinginlinevirtual
bpp::getSitePosition(size_t index) const =0bpp::LegacyMappingInterfacepure virtual
bpp::LegacyAbstractMapping::getSitePosition(size_t index) const overridebpp::LegacyAbstractMappinginlinevirtual
bpp::isEmpty() const =0bpp::LegacyMappingInterfacepure virtual
bpp::LegacyAbstractMapping::isEmpty() const overridebpp::LegacyAbstractMappinginlinevirtual
LegacyAbstractMapping(const Tree &tree)bpp::LegacyAbstractMappinginline
LegacyAbstractMapping(const LegacyAbstractMapping &absm)bpp::LegacyAbstractMappinginline
LegacyAbstractRewardMapping(const Tree &tree)bpp::LegacyAbstractRewardMappinginline
LegacyAbstractRewardMapping(const LegacyAbstractRewardMapping &arm)=defaultbpp::LegacyAbstractRewardMapping
LegacyMappingInterface()bpp::LegacyMappingInterfaceinline
LegacyProbabilisticRewardMapping(const Tree &tree, std::shared_ptr< const Reward > reward, size_t numberOfSites)bpp::LegacyProbabilisticRewardMappinginline
LegacyProbabilisticRewardMapping(const Tree &tree)bpp::LegacyProbabilisticRewardMappinginline
LegacyProbabilisticRewardMapping(const LegacyProbabilisticRewardMapping &prm)=defaultbpp::LegacyProbabilisticRewardMapping
LegacyRewardMappingInterface()bpp::LegacyRewardMappingInterfaceinline
mapping_bpp::LegacyProbabilisticRewardMappingprivate
nbBranches_bpp::LegacyAbstractMappingprivate
nbSites_bpp::LegacyAbstractMappingprivate
nodes_bpp::LegacyAbstractMappingprivate
operator()(size_t nodeIndex, size_t siteIndex) overridebpp::LegacyProbabilisticRewardMappinginlinevirtual
operator()(size_t nodeIndex, size_t siteIndex) const overridebpp::LegacyProbabilisticRewardMappinginlinevirtual
operator=(const LegacyProbabilisticRewardMapping &prm)=defaultbpp::LegacyProbabilisticRewardMapping
bpp::LegacyAbstractRewardMapping::operator=(const LegacyAbstractRewardMapping &arm)=defaultbpp::LegacyAbstractRewardMapping
bpp::LegacyAbstractMapping::operator=(const LegacyAbstractMapping &absm)bpp::LegacyAbstractMappinginline
operator[](size_t siteIndex)bpp::LegacyProbabilisticRewardMappinginline
operator[](size_t siteIndex) constbpp::LegacyProbabilisticRewardMappinginline
reward_bpp::LegacyProbabilisticRewardMappingprivate
setNumberOfSites(size_t numberOfSites) overridebpp::LegacyProbabilisticRewardMappingvirtual
bpp::setSitePosition(size_t index, int position)=0bpp::LegacyMappingInterfacepure virtual
bpp::LegacyAbstractMapping::setSitePosition(size_t index, int position) overridebpp::LegacyAbstractMappinginlinevirtual
setTree(const Tree &tree)bpp::LegacyProbabilisticRewardMappingvirtual
sitesPositions_bpp::LegacyAbstractMappingprivate
bpp::tree() const =0bpp::LegacyMappingInterfacepure virtual
bpp::LegacyAbstractMapping::tree() const overridebpp::LegacyAbstractMappinginlinevirtual
tree_bpp::LegacyAbstractMappingprivate
~Clonable()=defaultbpp::Clonablevirtual
~LegacyAbstractMapping()bpp::LegacyAbstractMappinginlinevirtual
~LegacyAbstractRewardMapping()bpp::LegacyAbstractRewardMappinginlinevirtual
~LegacyMappingInterface()bpp::LegacyMappingInterfaceinlinevirtual
~LegacyProbabilisticRewardMapping()bpp::LegacyProbabilisticRewardMappinginlinevirtual
~LegacyRewardMappingInterface()bpp::LegacyRewardMappingInterfaceinlinevirtual