bpp-phyl3  3.0.0
bpp::MarkovModulatedStateMap Member List

This is the complete list of members for bpp::MarkovModulatedStateMap, including all inherited members.

AbstractStateMap(std::shared_ptr< const Alphabet > alphabet)bpp::AbstractStateMapinline
AbstractStateMap(const AbstractStateMap &absm)bpp::AbstractStateMapinline
alphabet() const overridebpp::AbstractStateMapinlinevirtual
alphabet_bpp::AbstractStateMapprotected
clone() constbpp::MarkovModulatedStateMapinlinevirtual
getAlphabet() const overridebpp::AbstractStateMapinlinevirtual
getAlphabetStateAsChar(size_t index) const overridebpp::AbstractStateMapinlinevirtual
getAlphabetStateAsInt(size_t index) const overridebpp::AbstractStateMapinlinevirtual
getAlphabetStates() const overridebpp::AbstractStateMapinlinevirtual
getModelStates(int code) const overridebpp::AbstractStateMapinlinevirtual
getModelStates(const std::string &code) const overridebpp::AbstractStateMapinlinevirtual
getNumberOfModelStates() const overridebpp::AbstractStateMapinlinevirtual
getStateDescription(size_t index) constbpp::MarkovModulatedStateMapinlinevirtual
MarkovModulatedStateMap(const StateMapInterface &unitMap, unsigned int nbClasses)bpp::MarkovModulatedStateMap
nbClasses_bpp::MarkovModulatedStateMapprivate
operator!=(const StateMapInterface &sm) const overridebpp::AbstractStateMapinlinevirtual
operator=(const AbstractStateMap &absm)bpp::AbstractStateMapinline
operator==(const StateMapInterface &sm) const overridebpp::AbstractStateMapinlinevirtual
states_bpp::AbstractStateMapprotected
~Clonable()=defaultbpp::Clonablevirtual
~StateMapInterface()bpp::StateMapInterfaceinlinevirtual