bpp::OneJumpSubstitutionCount Member List

This is the complete list of members for bpp::OneJumpSubstitutionCount, including all inherited members.

AbstractSubstitutionCount(std::shared_ptr< const SubstitutionRegisterInterface > reg)	bpp::AbstractSubstitutionCount	inline
clone() const override	bpp::OneJumpSubstitutionCount	inlinevirtual
getAllNumbersOfSubstitutions(double length, size_t type=1) const override	bpp::OneJumpSubstitutionCount	virtual
getAlphabet() const	bpp::SubstitutionCountInterface	inlinevirtual
getNumberOfStates() const	bpp::SubstitutionCountInterface	inlinevirtual
getNumberOfSubstitutions(size_t initialState, size_t finalState, double length, size_t type=1) const override	bpp::OneJumpSubstitutionCount	inlinevirtual
getNumberOfSubstitutionsPerType(size_t initialState, size_t finalState, double length) const override	bpp::OneJumpSubstitutionCount	inlinevirtual
getNumberOfSubstitutionTypes() const	bpp::SubstitutionCountInterface	inlinevirtual
getSubstitutionRegister() const	bpp::AbstractSubstitutionCount	inlinevirtual
hasSubstitutionRegister() const	bpp::AbstractSubstitutionCount	inlinevirtual
model_	bpp::OneJumpSubstitutionCount	private
OneJumpSubstitutionCount(std::shared_ptr< const SubstitutionModelInterface > model)	bpp::OneJumpSubstitutionCount	inline
OneJumpSubstitutionCount(std::shared_ptr< const StateMapInterface > statemap)	bpp::OneJumpSubstitutionCount	inline
OneJumpSubstitutionCount(const OneJumpSubstitutionCount &ojsc)	bpp::OneJumpSubstitutionCount	inline
operator=(const OneJumpSubstitutionCount &ojsc)	bpp::OneJumpSubstitutionCount	inline
register_	bpp::AbstractSubstitutionCount	protected
setSubstitutionModel(std::shared_ptr< const SubstitutionModelInterface > model) override	bpp::OneJumpSubstitutionCount	inlinevirtual
setSubstitutionRegister(std::shared_ptr< const SubstitutionRegisterInterface > reg) override	bpp::OneJumpSubstitutionCount	inlinevirtual
storeAllNumbersOfSubstitutions(double length, size_t type, Eigen::MatrixXd &mat) const override	bpp::OneJumpSubstitutionCount	virtual
SubstitutionCountInterface()	bpp::SubstitutionCountInterface	inline
substitutionRegisterHasChanged() override	bpp::OneJumpSubstitutionCount	inlineprivatevirtual
tmp_	bpp::OneJumpSubstitutionCount	mutableprivate
~AbstractSubstitutionCount()	bpp::AbstractSubstitutionCount	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~OneJumpSubstitutionCount()	bpp::OneJumpSubstitutionCount	inlinevirtual
~SubstitutionCountInterface()	bpp::SubstitutionCountInterface	inlinevirtual