bpp-phyl3 3.0.0
bpp::OptimizationTools Member List

This is the complete list of members for bpp::OptimizationTools, including all inherited members.

buildDistanceTree(DistanceEstimation &estimationMethod, AgglomerativeDistanceMethodInterface &reconstructionMethod, const std::string &param, OptimizationOptions &optopt)bpp::OptimizationToolsstatic
DISTANCEMETHOD_INITbpp::OptimizationToolsstatic
DISTANCEMETHOD_ITERATIONSbpp::OptimizationToolsstatic
DISTANCEMETHOD_PAIRWISEbpp::OptimizationToolsstatic
estimateDistanceMatrix(DistanceEstimation &estimationMethod, const ParameterList &parametersToIgnore, const std::string &param=DISTANCEMETHOD_INIT, unsigned int verbose=0)bpp::OptimizationToolsstatic
OPTIMIZATION_BFGSbpp::OptimizationToolsstatic
OPTIMIZATION_BRENTbpp::OptimizationToolsstatic
OPTIMIZATION_GRADIENTbpp::OptimizationToolsstatic
OPTIMIZATION_NEWTONbpp::OptimizationToolsstatic
OptimizationTools()bpp::OptimizationTools
optimizeNumericalParameters(std::shared_ptr< PhyloLikelihoodInterface > lik, const OptimizationOptions &optopt)bpp::OptimizationToolsstatic
optimizeNumericalParameters2(std::shared_ptr< PhyloLikelihoodInterface > lik, const OptimizationOptions &optopt)bpp::OptimizationToolsstatic
optimizeNumericalParameters2(std::shared_ptr< SingleProcessPhyloLikelihood > lik, const OptimizationOptions &optopt)bpp::OptimizationToolsstatic
~OptimizationTools()bpp::OptimizationToolsvirtual