bpp::PhyloSubstitutionMapping Member List

This is the complete list of members for bpp::PhyloSubstitutionMapping, including all inherited members.

clone() const =0	bpp::PhyloSubstitutionMapping	pure virtual
computeCounts(short unresolvedOption=SubstitutionMappingTools::UNRESOLVED_ZERO, double threshold=-1, bool verbose=true)=0	bpp::PhyloSubstitutionMapping	pure virtual
computeNormalizations(const ParameterList &nullParams, short unresolvedOption=SubstitutionMappingTools::UNRESOLVED_ZERO, bool verbose=true)=0	bpp::PhyloSubstitutionMapping	pure virtual
counts()=0	bpp::PhyloSubstitutionMapping	pure virtual
counts() const =0	bpp::PhyloSubstitutionMapping	pure virtual
countsPerformed() const =0	bpp::PhyloSubstitutionMapping	pure virtual
getModel(unsigned int branchId, size_t classIndex) const =0	bpp::PhyloSubstitutionMapping	pure virtual
getParameters() const =0	bpp::PhyloSubstitutionMapping	pure virtual
matchParametersValues(const ParameterList &nullParams)=0	bpp::PhyloSubstitutionMapping	pure virtual
normalizations()=0	bpp::PhyloSubstitutionMapping	pure virtual
normalizations() const =0	bpp::PhyloSubstitutionMapping	pure virtual
normalizationsPerformed() const =0	bpp::PhyloSubstitutionMapping	pure virtual
PhyloSubstitutionMapping()	bpp::PhyloSubstitutionMapping	inline
setDistances(const AlphabetIndex2 &ndist)=0	bpp::PhyloSubstitutionMapping	pure virtual
~Clonable()=default	bpp::Clonable	virtual
~PhyloSubstitutionMapping()	bpp::PhyloSubstitutionMapping	inlinevirtual