bpp-phyl3
3.0.0
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This is the complete list of members for bpp::RASiteSimulationResult, including all inherited members.
addNode(unsigned int nodeId, MutationPath path) | bpp::SiteSimulationResult | inlinevirtual |
alphabet() const | bpp::SiteSimulationResult | inline |
ancestralStates_ | bpp::SiteSimulationResult | private |
currentIndex_ | bpp::SiteSimulationResult | private |
getAlphabet() const | bpp::SiteSimulationResult | inline |
getAncestralState(size_t i) const | bpp::SiteSimulationResult | inlinevirtual |
getAncestralState(unsigned int nodeId) const | bpp::SiteSimulationResult | inlinevirtual |
getFinalStates() const | bpp::SiteSimulationResult | inlinevirtual |
getLeaveNames() const | bpp::SiteSimulationResult | inlinevirtual |
getMutationPath(size_t i) const | bpp::SiteSimulationResult | inlinevirtual |
getMutationPath(unsigned int nodeId) const | bpp::SiteSimulationResult | inlinevirtual |
getRate() const | bpp::RASiteSimulationResult | inlinevirtual |
getSite(const TransitionModelInterface &model) const | bpp::SiteSimulationResult | inlinevirtual |
getSubstitutionCount(size_t i) const | bpp::SiteSimulationResult | inlinevirtual |
getSubstitutionCount(size_t i, const SubstitutionRegisterInterface ®, std::vector< double > &counts) const | bpp::SiteSimulationResult | inlinevirtual |
getSubstitutionCount(unsigned int nodeId) const | bpp::SiteSimulationResult | inlinevirtual |
getSubstitutionCount(unsigned int nodeId, const SubstitutionRegisterInterface ®, std::vector< double > &counts) const | bpp::SiteSimulationResult | inlinevirtual |
getSubstitutionVector(const SubstitutionRegisterInterface ®) const | bpp::SiteSimulationResult | inlinevirtual |
indexes_ | bpp::SiteSimulationResult | mutableprivate |
leavesId_ | bpp::SiteSimulationResult | private |
operator=(const SiteSimulationResult &ssr) | bpp::SiteSimulationResult | inline |
paths_ | bpp::SiteSimulationResult | private |
RASiteSimulationResult(std::shared_ptr< const ParametrizablePhyloTree > tree, std::shared_ptr< const StateMapInterface > stateMap, size_t ancestralStateIndex, double rate) | bpp::RASiteSimulationResult | inline |
rate_ | bpp::RASiteSimulationResult | protected |
SiteSimulationResult(std::shared_ptr< const ParametrizablePhyloTree > tree, std::shared_ptr< const StateMapInterface > statemap, size_t ancestralState) | bpp::SiteSimulationResult | inline |
SiteSimulationResult(const SiteSimulationResult &ssr) | bpp::SiteSimulationResult | inline |
statemap_ | bpp::SiteSimulationResult | private |
tree_ | bpp::SiteSimulationResult | private |
~RASiteSimulationResult() | bpp::RASiteSimulationResult | inlinevirtual |
~SiteSimulationResult() | bpp::SiteSimulationResult | inlinevirtual |