bpp-phyl3 3.0.0
bpp::RewardMappingTools Member List

This is the complete list of members for bpp::RewardMappingTools, including all inherited members.

computeRewardVectors(LikelihoodCalculationSingleProcess &rltc, const std::vector< uint > &edgeIds, Reward &reward, short unresolvedOption=SubstitutionMappingTools::UNRESOLVED_ZERO, bool verbose=true)bpp::RewardMappingToolsstatic
computeSumForBranch(const ProbabilisticRewardMapping &smap, size_t branchIndex)bpp::RewardMappingToolsstatic
computeSumForSite(const ProbabilisticRewardMapping &smap, size_t siteIndex)bpp::RewardMappingToolsstatic
readFromStream(std::istream &in, ProbabilisticRewardMapping &rewards)bpp::RewardMappingToolsstatic
RewardMappingTools()bpp::RewardMappingToolsinline
writeToStream(const ProbabilisticRewardMapping &rewards, const AlignmentDataInterface &sites, std::ostream &out)bpp::RewardMappingToolsstatic
~RewardMappingTools()bpp::RewardMappingToolsinlinevirtual