bpp-phyl3  3.0.0
bpp::SWSubstitutionRegister Member List

This is the complete list of members for bpp::SWSubstitutionRegister, including all inherited members.

AbstractSubstitutionRegister(std::shared_ptr< const StateMapInterface > stateMap, const std::string &name)bpp::AbstractSubstitutionRegisterinline
AbstractSubstitutionRegister(const AbstractSubstitutionRegister &asr)bpp::AbstractSubstitutionRegisterinline
alphabet() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
clone() constbpp::SWSubstitutionRegisterinlinevirtual
genCode_bpp::SWSubstitutionRegisterprivate
getAlphabet() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
getName() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
getNumberOfSubstitutionTypes() constbpp::SWSubstitutionRegisterinlinevirtual
getStateMap() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
getType(size_t fromState, size_t toState) constbpp::SWSubstitutionRegisterinlinevirtual
getTypeName(size_t type) constbpp::SWSubstitutionRegisterinlinevirtual
name_bpp::AbstractSubstitutionRegisterprotected
operator=(const SWSubstitutionRegister &reg)bpp::SWSubstitutionRegisterinline
bpp::AbstractSubstitutionRegister::operator=(const AbstractSubstitutionRegister &asr)bpp::AbstractSubstitutionRegisterinline
stateMap() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
stateMap_bpp::AbstractSubstitutionRegisterprotected
SubstitutionRegisterInterface()bpp::SubstitutionRegisterInterfaceinline
SWSubstitutionRegister(std::shared_ptr< const StateMapInterface > stateMap)bpp::SWSubstitutionRegisterinline
SWSubstitutionRegister(std::shared_ptr< const StateMapInterface > stateMap, std::shared_ptr< const GeneticCode > genCode)bpp::SWSubstitutionRegisterinline
SWSubstitutionRegister(const SWSubstitutionRegister &reg)bpp::SWSubstitutionRegisterinline
~AbstractSubstitutionRegister()bpp::AbstractSubstitutionRegisterinlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~SubstitutionRegisterInterface()bpp::SubstitutionRegisterInterfaceinlinevirtual