bpp-phyl3  3.0.0
bpp::TotalSubstitutionRegister Member List

This is the complete list of members for bpp::TotalSubstitutionRegister, including all inherited members.

AbstractSubstitutionRegister(std::shared_ptr< const StateMapInterface > stateMap, const std::string &name)bpp::AbstractSubstitutionRegisterinline
AbstractSubstitutionRegister(const AbstractSubstitutionRegister &asr)bpp::AbstractSubstitutionRegisterinline
alphabet() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
clone() const overridebpp::TotalSubstitutionRegisterinlinevirtual
getAlphabet() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
getName() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
getNumberOfSubstitutionTypes() const overridebpp::TotalSubstitutionRegisterinlinevirtual
getStateMap() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
getType(size_t fromState, size_t toState) const overridebpp::TotalSubstitutionRegisterinlinevirtual
getTypeName(size_t type) const overridebpp::TotalSubstitutionRegisterinlinevirtual
name_bpp::AbstractSubstitutionRegisterprotected
operator=(const AbstractSubstitutionRegister &asr)bpp::AbstractSubstitutionRegisterinline
stateMap() const overridebpp::AbstractSubstitutionRegisterinlinevirtual
stateMap_bpp::AbstractSubstitutionRegisterprotected
SubstitutionRegisterInterface()bpp::SubstitutionRegisterInterfaceinline
TotalSubstitutionRegister(std::shared_ptr< const StateMapInterface > stateMap)bpp::TotalSubstitutionRegisterinline
~AbstractSubstitutionRegister()bpp::AbstractSubstitutionRegisterinlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~SubstitutionRegisterInterface()bpp::SubstitutionRegisterInterfaceinlinevirtual