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bpp-popgen3
3.0.0
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This is the complete list of members for bpp::Group, including all inherited members.
| addEmptyIndividual(const std::string &individualId) | bpp::Group | |
| addIndividual(const Individual &ind) | bpp::Group | |
| addIndividualSequenceAtPosition(size_t individualPosition, size_t sequencePosition, std::unique_ptr< Sequence > &sequence) | bpp::Group | |
| clear() | bpp::Group | inline |
| clone() const override | bpp::Group | inlinevirtual |
| deleteIndividualAtPosition(size_t individualPosition) | bpp::Group | |
| deleteIndividualById(const std::string &individualId) | bpp::Group | |
| deleteIndividualGenotype(size_t individualPosition) | bpp::Group | |
| deleteIndividualSequenceAtPosition(size_t individualPosition, size_t sequencePosition) | bpp::Group | |
| deleteIndividualSequenceByName(size_t individualPosition, const std::string &sequence_name) | bpp::Group | |
| getAlphabet() const | bpp::Group | |
| getGroupId() const | bpp::Group | inline |
| getGroupName() const | bpp::Group | inline |
| getGroupSizeForLocus(size_t locusPosition) const | bpp::Group | |
| getGroupSizeForSequence(size_t sequencePosition) const | bpp::Group | |
| getIndividualAtPosition(size_t individualPosition) const | bpp::Group | |
| getIndividualById(const std::string &individualId) const | bpp::Group | |
| getIndividualCoordAtPosition(size_t individualPosition) const | bpp::Group | |
| getIndividualDateAtPosition(size_t individualPosition) const | bpp::Group | |
| getIndividualLocalityAtPosition(size_t individualPosition) const | bpp::Group | |
| getIndividualMonolocusGenotype(size_t individualPosition, size_t locusPosition) const | bpp::Group | |
| getIndividualNumberOfSequences(size_t individualPosition) const | bpp::Group | |
| getIndividualPosition(const std::string &individualId) const | bpp::Group | |
| getIndividualSequenceAtPosition(size_t individualPosition, size_t sequencePosition) const | bpp::Group | |
| getIndividualSequenceByName(size_t individualPosition, const std::string &sequence_name) const | bpp::Group | |
| getIndividualSequencePosition(size_t individualPosition, const std::string &sequence_name) const | bpp::Group | |
| getIndividualSequencesNames(size_t individualPosition) const | bpp::Group | |
| getIndividualSexAtPosition(size_t individualPosition) const | bpp::Group | |
| getMaxNumberOfSequences() const | bpp::Group | |
| getNumberOfIndividuals() const | bpp::Group | inline |
| Group(size_t groupId) | bpp::Group | inline |
| Group(const Group &group) | bpp::Group | inline |
| Group(const Group &group, size_t groupId) | bpp::Group | inline |
| hasIndividualGenotype(size_t individualPosition) const | bpp::Group | |
| hasIndividualSequences(size_t individualPosition) const | bpp::Group | |
| hasSequenceData() const | bpp::Group | |
| id_ | bpp::Group | protected |
| individuals_ | bpp::Group | protected |
| initIndividualGenotype(size_t individualPosition, size_t loci_number) | bpp::Group | |
| name_ | bpp::Group | protected |
| operator=(const Group &group) | bpp::Group | inline |
| removeIndividualAtPosition(size_t individualPosition) | bpp::Group | |
| removeIndividualById(const std::string &individualId) | bpp::Group | |
| setGroupId(size_t groupId) | bpp::Group | inline |
| setGroupName(const std::string &groupName) | bpp::Group | inline |
| setIndividualCoordAtPosition(size_t individualPosition, const Point2D< double > &coord) | bpp::Group | |
| setIndividualDateAtPosition(size_t individualPosition, const Date &date) | bpp::Group | |
| setIndividualGenotype(size_t individualPosition, const MultilocusGenotype &genotype) | bpp::Group | |
| setIndividualLocalityAtPosition(size_t individualPosition, std::shared_ptr< const Locality< double >> locality) | bpp::Group | |
| setIndividualMonolocusGenotype(size_t individualPosition, size_t locusPosition, const MonolocusGenotypeInterface &monogen) | bpp::Group | |
| setIndividualMonolocusGenotypeByAlleleId(size_t individualPosition, size_t locusPosition, const std::vector< std::string > &alleleId, const LocusInfo &locusInfo) | bpp::Group | |
| setIndividualMonolocusGenotypeByAlleleKey(size_t individualPosition, size_t locusPosition, const std::vector< size_t > &alleleKeys) | bpp::Group | |
| setIndividualSequences(size_t individualPosition, const SequenceContainerInterface &sc) | bpp::Group | |
| setIndividualSexAtPosition(size_t individualPosition, const unsigned short sex) | bpp::Group | |
| ~Clonable()=default | bpp::Clonable | virtual |
| ~Group()=default | bpp::Group | virtual |