bpp-popgen3
3.0.0
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This is the complete list of members for bpp::Group, including all inherited members.
addEmptyIndividual(const std::string &individualId) | bpp::Group | |
addIndividual(const Individual &ind) | bpp::Group | |
addIndividualSequenceAtPosition(size_t individualPosition, size_t sequencePosition, std::unique_ptr< Sequence > &sequence) | bpp::Group | |
clear() | bpp::Group | inline |
clone() const override | bpp::Group | inlinevirtual |
deleteIndividualAtPosition(size_t individualPosition) | bpp::Group | |
deleteIndividualById(const std::string &individualId) | bpp::Group | |
deleteIndividualGenotype(size_t individualPosition) | bpp::Group | |
deleteIndividualSequenceAtPosition(size_t individualPosition, size_t sequencePosition) | bpp::Group | |
deleteIndividualSequenceByName(size_t individualPosition, const std::string &sequence_name) | bpp::Group | |
getAlphabet() const | bpp::Group | |
getGroupId() const | bpp::Group | inline |
getGroupName() const | bpp::Group | inline |
getGroupSizeForLocus(size_t locusPosition) const | bpp::Group | |
getGroupSizeForSequence(size_t sequencePosition) const | bpp::Group | |
getIndividualAtPosition(size_t individualPosition) const | bpp::Group | |
getIndividualById(const std::string &individualId) const | bpp::Group | |
getIndividualCoordAtPosition(size_t individualPosition) const | bpp::Group | |
getIndividualDateAtPosition(size_t individualPosition) const | bpp::Group | |
getIndividualLocalityAtPosition(size_t individualPosition) const | bpp::Group | |
getIndividualMonolocusGenotype(size_t individualPosition, size_t locusPosition) const | bpp::Group | |
getIndividualNumberOfSequences(size_t individualPosition) const | bpp::Group | |
getIndividualPosition(const std::string &individualId) const | bpp::Group | |
getIndividualSequenceAtPosition(size_t individualPosition, size_t sequencePosition) const | bpp::Group | |
getIndividualSequenceByName(size_t individualPosition, const std::string &sequence_name) const | bpp::Group | |
getIndividualSequencePosition(size_t individualPosition, const std::string &sequence_name) const | bpp::Group | |
getIndividualSequencesNames(size_t individualPosition) const | bpp::Group | |
getIndividualSexAtPosition(size_t individualPosition) const | bpp::Group | |
getMaxNumberOfSequences() const | bpp::Group | |
getNumberOfIndividuals() const | bpp::Group | inline |
Group(size_t groupId) | bpp::Group | inline |
Group(const Group &group) | bpp::Group | inline |
Group(const Group &group, size_t groupId) | bpp::Group | inline |
hasIndividualGenotype(size_t individualPosition) const | bpp::Group | |
hasIndividualSequences(size_t individualPosition) const | bpp::Group | |
hasSequenceData() const | bpp::Group | |
id_ | bpp::Group | protected |
individuals_ | bpp::Group | protected |
initIndividualGenotype(size_t individualPosition, size_t loci_number) | bpp::Group | |
name_ | bpp::Group | protected |
operator=(const Group &group) | bpp::Group | inline |
removeIndividualAtPosition(size_t individualPosition) | bpp::Group | |
removeIndividualById(const std::string &individualId) | bpp::Group | |
setGroupId(size_t groupId) | bpp::Group | inline |
setGroupName(const std::string &groupName) | bpp::Group | inline |
setIndividualCoordAtPosition(size_t individualPosition, const Point2D< double > &coord) | bpp::Group | |
setIndividualDateAtPosition(size_t individualPosition, const Date &date) | bpp::Group | |
setIndividualGenotype(size_t individualPosition, const MultilocusGenotype &genotype) | bpp::Group | |
setIndividualLocalityAtPosition(size_t individualPosition, std::shared_ptr< const Locality< double >> locality) | bpp::Group | |
setIndividualMonolocusGenotype(size_t individualPosition, size_t locusPosition, const MonolocusGenotypeInterface &monogen) | bpp::Group | |
setIndividualMonolocusGenotypeByAlleleId(size_t individualPosition, size_t locusPosition, const std::vector< std::string > &alleleId, const LocusInfo &locusInfo) | bpp::Group | |
setIndividualMonolocusGenotypeByAlleleKey(size_t individualPosition, size_t locusPosition, const std::vector< size_t > &alleleKeys) | bpp::Group | |
setIndividualSequences(size_t individualPosition, const SequenceContainerInterface &sc) | bpp::Group | |
setIndividualSexAtPosition(size_t individualPosition, const unsigned short sex) | bpp::Group | |
~Clonable()=default | bpp::Clonable | virtual |
~Group()=default | bpp::Group | virtual |