bpp::Individual Member List

This is the complete list of members for bpp::Individual, including all inherited members.

addSequence(size_t sequenceKey, std::unique_ptr< Sequence > &sequence)	bpp::Individual
coord() const	bpp::Individual
coord_	bpp::Individual	protected
countHeterozygousLoci() const	bpp::Individual
countHomozygousLoci() const	bpp::Individual
countNonMissingLoci() const	bpp::Individual
date() const	bpp::Individual
date_	bpp::Individual	protected
deleteGenotype()	bpp::Individual
deleteSequenceAtPosition(size_t sequencePosition)	bpp::Individual
deleteSequenceByName(const std::string &sequenceName)	bpp::Individual
genotype_	bpp::Individual	protected
getGenotype() const	bpp::Individual
getId() const	bpp::Individual	inline
getLocality() const	bpp::Individual
getMonolocusGenotype(size_t locusPosition)	bpp::Individual
getNumberOfSequences() const	bpp::Individual	inline
getSequenceAlphabet() const	bpp::Individual
getSequenceNames() const	bpp::Individual	inline
getSequencePosition(const std::string &sequenceKey) const	bpp::Individual
getSequencePositions() const	bpp::Individual
getSex() const	bpp::Individual	inline
getX() const	bpp::Individual
getY() const	bpp::Individual
hasCoord() const	bpp::Individual
hasDate() const	bpp::Individual
hasGenotype() const	bpp::Individual
hasLocality() const	bpp::Individual	inline
hasSequenceAtPosition(size_t position) const	bpp::Individual
hasSequences() const	bpp::Individual
id_	bpp::Individual	protected
Individual()	bpp::Individual
Individual(const std::string &id)	bpp::Individual
Individual(const std::string &id, const Date &date, const Point2D< double > &coord, std::shared_ptr< Locality< double >> locality, const unsigned short sex)	bpp::Individual
Individual(const Individual &ind)	bpp::Individual
initGenotype(size_t lociNumber)	bpp::Individual
locality() const	bpp::Individual
locality_	bpp::Individual	protected
operator=(const Individual &ind)	bpp::Individual
sequenceAlphabet() const	bpp::Individual
sequenceAtPosition(size_t sequencePosition) const	bpp::Individual
sequenceByName(const std::string &sequenceName) const	bpp::Individual
sequences() const	bpp::Individual	inline
sequences_	bpp::Individual	protected
setCoord(const Point2D< double > &coord)	bpp::Individual
setCoord(const double x, const double y)	bpp::Individual
setDate(const Date &date)	bpp::Individual
setGenotype(const MultilocusGenotype &genotype)	bpp::Individual
setId(const std::string &id)	bpp::Individual
setLocality(std::shared_ptr< const Locality< double >> locality)	bpp::Individual	inline
setMonolocusGenotype(size_t locusPosition, const MonolocusGenotypeInterface &monogen)	bpp::Individual
setMonolocusGenotypeByAlleleId(size_t locusPosition, const std::vector< std::string > alleleId, const LocusInfo &locusInfo)	bpp::Individual
setMonolocusGenotypeByAlleleKey(size_t locusPosition, const std::vector< size_t > alleleKeys)	bpp::Individual
setSequences(const SequenceContainerInterface &sc)	bpp::Individual	inline
setSex(const unsigned short sex)	bpp::Individual
setX(const double x)	bpp::Individual
setY(const double y)	bpp::Individual
sex_	bpp::Individual	protected
~Individual()	bpp::Individual	virtual