bpp::PolymorphismSequenceContainerTools Member List

This is the complete list of members for bpp::PolymorphismSequenceContainerTools, including all inherited members.

excludeFlankingGap(const PolymorphismSequenceContainer &psc)	bpp::PolymorphismSequenceContainerTools	static
extractGroup(const PolymorphismSequenceContainer &psc, size_t groupId)	bpp::PolymorphismSequenceContainerTools	static
extractIngroup(const PolymorphismSequenceContainer &psc)	bpp::PolymorphismSequenceContainerTools	static
extractOutgroup(const PolymorphismSequenceContainer &psc)	bpp::PolymorphismSequenceContainerTools	static
get3Prime(const PolymorphismSequenceContainer &psc, const std::string &setName, const GeneticCode &gCode)	bpp::PolymorphismSequenceContainerTools	static
get5Prime(const PolymorphismSequenceContainer &psc, const std::string &setName)	bpp::PolymorphismSequenceContainerTools	static
getCompleteSites(const PolymorphismSequenceContainer &psc)	bpp::PolymorphismSequenceContainerTools	static
getIngroupSpeciesName(const PolymorphismSequenceContainer &psc)	bpp::PolymorphismSequenceContainerTools	static
getIntrons(const PolymorphismSequenceContainer &psc, const std::string &setName, const GeneticCode &gCode)	bpp::PolymorphismSequenceContainerTools	static
getNonCodingSites(const PolymorphismSequenceContainer &psc, const std::string &setName)	bpp::PolymorphismSequenceContainerTools	static
getNonSynonymousSites(const PolymorphismSequenceContainer &psc, const GeneticCode &gCode)	bpp::PolymorphismSequenceContainerTools	static
getNumberOfCompleteSites(const PolymorphismSequenceContainer &psc, bool ingroup)	bpp::PolymorphismSequenceContainerTools	static
getNumberOfNonGapSites(const PolymorphismSequenceContainer &psc, bool ingroup)	bpp::PolymorphismSequenceContainerTools	static
getOnePosition(const PolymorphismSequenceContainer &psc, const std::string &setName, size_t pos)	bpp::PolymorphismSequenceContainerTools	static
getSelectedSequences(const PolymorphismSequenceContainer &psc, const SequenceSelection &ss)	bpp::PolymorphismSequenceContainerTools	static
getSelectedSites(const PolymorphismSequenceContainer &psc, const std::string &setName, bool phase)	bpp::PolymorphismSequenceContainerTools	static
getSitesWithoutGaps(const PolymorphismSequenceContainer &psc)	bpp::PolymorphismSequenceContainerTools	static
getSynonymousSites(const PolymorphismSequenceContainer &psc, const GeneticCode &gCode)	bpp::PolymorphismSequenceContainerTools	static
read(const std::string &path, std::shared_ptr< const Alphabet > alpha)	bpp::PolymorphismSequenceContainerTools	static
sample(const PolymorphismSequenceContainer &psc, size_t n, bool replace=true)	bpp::PolymorphismSequenceContainerTools	static
~PolymorphismSequenceContainerTools()	bpp::PolymorphismSequenceContainerTools	virtual