bpp::AbstractIAlignment Member List

This is the complete list of members for bpp::AbstractIAlignment, including all inherited members.

AbstractIAlignment()	bpp::AbstractIAlignment	inline
appendAlignmentFromFile(const std::string &path, SequenceContainerInterface &sc) const	bpp::AbstractIAlignment	inlineprotectedvirtual
appendAlignmentFromStream(std::istream &input, SequenceContainerInterface &sc) const =0	bpp::AbstractIAlignment	protectedpure virtual
getDataType() const	bpp::IOSequence	inlinevirtual
getFormatDescription() const=0	bpp::IOFormat	pure virtual
getFormatName() const=0	bpp::IOFormat	pure virtual
IAlignment()	bpp::IAlignment	inline
IOFormat()	bpp::IOFormat
IOSequence()	bpp::IOSequence	inline
readAlignment(std::istream &input, SequenceContainerInterface &sc) const override	bpp::AbstractIAlignment	inlinevirtual
readAlignment(const std::string &path, SequenceContainerInterface &sc) const override	bpp::AbstractIAlignment	inlinevirtual
readAlignment(const std::string &path, std::shared_ptr< const Alphabet > alpha) const override	bpp::AbstractIAlignment	inlinevirtual
readAlignment(std::istream &input, std::shared_ptr< const Alphabet > alpha) const override	bpp::AbstractIAlignment	inlinevirtual
readAlignmentFromFile(const std::string &path, std::shared_ptr< const Alphabet > alpha) const	bpp::AbstractIAlignment	inlineprotectedvirtual
readAlignmentFromStream(std::istream &input, std::shared_ptr< const Alphabet > alpha) const	bpp::AbstractIAlignment	inlineprotectedvirtual
~AbstractIAlignment()	bpp::AbstractIAlignment	inlinevirtual
~IAlignment()	bpp::IAlignment	inlinevirtual
~IOFormat()	bpp::IOFormat	virtual
~IOSequence()	bpp::IOSequence	inlinevirtual