bpp::AbstractIProbabilisticAlignment2 Member List

This is the complete list of members for bpp::AbstractIProbabilisticAlignment2, including all inherited members.

AbstractIProbabilisticAlignment()	bpp::AbstractIProbabilisticAlignment	inline
AbstractIProbabilisticAlignment2()	bpp::AbstractIProbabilisticAlignment2	inline
appendAlignmentFromFile(const std::string &path, ProbabilisticSequenceContainerInterface &sc) const	bpp::AbstractIProbabilisticAlignment	inlineprotectedvirtual
appendAlignmentFromStream(std::istream &input, ProbabilisticSequenceContainerInterface &sc) const =0	bpp::AbstractIProbabilisticAlignment	protectedpure virtual
getDataType() const	bpp::IOProbabilisticSequence	inlinevirtual
getFormatDescription() const=0	bpp::IOFormat	pure virtual
getFormatName() const=0	bpp::IOFormat	pure virtual
IOFormat()	bpp::IOFormat
IOProbabilisticSequence()	bpp::IOProbabilisticSequence	inline
IProbabilisticAlignment()	bpp::IProbabilisticAlignment	inline
IProbabilisticSequence()	bpp::IProbabilisticSequence	inline
readAlignment(std::istream &input, ProbabilisticSequenceContainerInterface &sc) const override	bpp::AbstractIProbabilisticAlignment	inlinevirtual
readAlignment(const std::string &path, ProbabilisticSequenceContainerInterface &sc) const override	bpp::AbstractIProbabilisticAlignment	inlinevirtual
readAlignment(const std::string &path, std::shared_ptr< const Alphabet > alpha) const override	bpp::AbstractIProbabilisticAlignment	inlinevirtual
readAlignment(std::istream &input, std::shared_ptr< const Alphabet > alpha) const override	bpp::AbstractIProbabilisticAlignment	inlinevirtual
readAlignmentFromFile(const std::string &path, std::shared_ptr< const Alphabet > &alpha) const	bpp::AbstractIProbabilisticAlignment	inlineprotectedvirtual
readAlignmentFromStream(std::istream &input, std::shared_ptr< const Alphabet > &alpha) const	bpp::AbstractIProbabilisticAlignment	inlineprotectedvirtual
readSequences(std::istream &input, ProbabilisticSequenceContainerInterface &sc) const override	bpp::AbstractIProbabilisticAlignment2	inlinevirtual
readSequences(const std::string &path, ProbabilisticSequenceContainerInterface &sc) const override	bpp::AbstractIProbabilisticAlignment2	inlinevirtual
readSequences(std::istream &input, std::shared_ptr< const Alphabet > alpha) const override	bpp::AbstractIProbabilisticAlignment2	inlinevirtual
readSequences(const std::string &path, std::shared_ptr< const Alphabet > alpha) const override	bpp::AbstractIProbabilisticAlignment2	inlinevirtual
~AbstractIProbabilisticAlignment()	bpp::AbstractIProbabilisticAlignment	inlinevirtual
~AbstractIProbabilisticAlignment2()	bpp::AbstractIProbabilisticAlignment2	inlinevirtual
~IOFormat()	bpp::IOFormat	virtual
~IOProbabilisticSequence()	bpp::IOProbabilisticSequence	inlinevirtual
~IProbabilisticAlignment()	bpp::IProbabilisticAlignment	inlinevirtual
~IProbabilisticSequence()	bpp::IProbabilisticSequence	inlinevirtual