AbstractOProbabilisticSequence() | bpp::AbstractOProbabilisticSequence | inline |
AbstractOProbabilisticSequence2() | bpp::AbstractOProbabilisticSequence2 | inline |
getDataType() const | bpp::IOProbabilisticSequence | inlinevirtual |
getFormatDescription() const=0 | bpp::IOFormat | pure virtual |
getFormatName() const=0 | bpp::IOFormat | pure virtual |
IOFormat() | bpp::IOFormat | |
IOProbabilisticSequence() | bpp::IOProbabilisticSequence | inline |
OProbabilisticAlignment() | bpp::OProbabilisticAlignment | inline |
OProbabilisticSequence() | bpp::OProbabilisticSequence | inline |
writeAlignment(std::ostream &output, const ProbabilisticSiteContainerInterface &sc) const override | bpp::AbstractOProbabilisticSequence2 | inlinevirtual |
writeAlignment(const std::string &path, const ProbabilisticSiteContainerInterface &sc, bool overwrite=true) const override | bpp::AbstractOProbabilisticSequence2 | inlinevirtual |
writeSequences(std::ostream &output, const ProbabilisticSequenceContainerInterface &psc) const override=0 | bpp::AbstractOProbabilisticSequence | pure virtual |
writeSequences(const std::string &path, const ProbabilisticSequenceContainerInterface &psc, bool overwrite=true) const override | bpp::AbstractOProbabilisticSequence | inlinevirtual |
~AbstractOProbabilisticSequence() | bpp::AbstractOProbabilisticSequence | inlinevirtual |
~AbstractOProbabilisticSequence2() | bpp::AbstractOProbabilisticSequence2 | inlinevirtual |
~IOFormat() | bpp::IOFormat | virtual |
~IOProbabilisticSequence() | bpp::IOProbabilisticSequence | inlinevirtual |
~OProbabilisticAlignment() | bpp::OProbabilisticAlignment | inlinevirtual |
~OProbabilisticSequence() | bpp::OProbabilisticSequence | inlinevirtual |