bpp::AbstractSequenceSymbolList< T > Member List

This is the complete list of members for bpp::AbstractSequenceSymbolList< T >, including all inherited members.

addElement(const T &v)	bpp::SymbolList< T >	inlinevirtual
addElement(size_t pos, const T &v)	bpp::SymbolList< T >	inlinevirtual
alphabet_	bpp::SymbolList< T >	private
clearComments()=0	bpp::CoreSequence	pure virtual
clone() const =0	bpp::AbstractSequenceSymbolList< T >	pure virtual
content_	bpp::SymbolList< T >	protected
CoreSequence()	bpp::CoreSequence	inline
deleteElement(size_t pos)	bpp::SymbolList< T >	inlinevirtual
deleteElements(size_t pos, size_t len)	bpp::SymbolList< T >	inlinevirtual
getAlphabet() const	bpp::SymbolList< T >	inlinevirtual
getComments() const =0	bpp::CoreSequence	pure virtual
getContent() const	bpp::SymbolList< T >	inlinevirtual
getElement(size_t pos) const	bpp::SymbolList< T >	inlinevirtual
getName() const =0	bpp::CoreSequence	pure virtual
getStateValueAt(size_t siteIndex, int state) const	bpp::CruxSymbolList	inlinevirtual
getValue(size_t pos) const	bpp::SymbolList< T >	inlinevirtual
operator()(size_t siteIndex, int state) const	bpp::CruxSymbolList	inlinevirtual
operator=(const CoreSymbolList< T > &list)	bpp::SymbolList< T >	inline
operator=(const SymbolList< T > &list)	bpp::SymbolList< T >	inline
operator[](size_t pos) const	bpp::SymbolList< T >	inlinevirtual
operator[](size_t pos)	bpp::SymbolList< T >	inlinevirtual
setComments(const Comments &comments)=0	bpp::CoreSequence	pure virtual
setContent(const std::vector< T > &list)	bpp::SymbolList< T >	inlinevirtual
setElement(size_t pos, const T &v)	bpp::SymbolList< T >	inlinevirtual
setName(const std::string &name)=0	bpp::CoreSequence	pure virtual
setToSizeL(size_t newSize)=0	bpp::CoreSequence	pure virtual
setToSizeR(size_t newSize)=0	bpp::CoreSequence	pure virtual
shuffle()	bpp::SymbolList< T >	inlinevirtual
size() const	bpp::SymbolList< T >	inlinevirtual
SymbolList(const Alphabet *alpha)	bpp::SymbolList< T >	inline
SymbolList(const std::vector< T > &list, const Alphabet *alpha)	bpp::SymbolList< T >	inline
SymbolList(const SymbolList< T > &list)	bpp::SymbolList< T >	inline
SymbolList(const CoreSymbolList< T > &list)	bpp::SymbolList< T >	inline
toString() const	bpp::SymbolList< T >	inlinevirtual
~AbstractSequenceSymbolList()	bpp::AbstractSequenceSymbolList< T >	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~CoreSequence()	bpp::CoreSequence	inlinevirtual
~CoreSequenceSymbolList()	bpp::CoreSequenceSymbolList< T >	inlinevirtual
~CoreSymbolList()	bpp::CoreSymbolList< T >	inlinevirtual
~CruxSymbolList()	bpp::CruxSymbolList	inlinevirtual
~SymbolList()	bpp::SymbolList< T >	inlinevirtual