bpp::AbstractValuesContainer Member List

This is the complete list of members for bpp::AbstractValuesContainer, including all inherited members.

AbstractValuesContainer(const Alphabet *alpha)	bpp::AbstractValuesContainer	inline
AbstractValuesContainer(const Comments &comments, const Alphabet *alpha)	bpp::AbstractValuesContainer	inline
AbstractValuesContainer(const AbstractValuesContainer &sc)	bpp::AbstractValuesContainer	inline
alphabet_	bpp::AbstractValuesContainer	protected
clear()=0	bpp::SequencedValuesContainer	pure virtual
clearComments()	bpp::Commentable	inline
clone() const =0	bpp::OrderedValuesContainer	pure virtual
Commentable()	bpp::Commentable	inline
Commentable(const Comments &comments)	bpp::Commentable	inline
Commentable(const Commentable &com)	bpp::Commentable	inline
comments_	bpp::Commentable	protected
createEmptyContainer() const =0	bpp::SequencedValuesContainer	pure virtual
deleteGeneralComments()	bpp::AbstractValuesContainer	inlinevirtual
getAlphabet() const	bpp::AbstractValuesContainer	inlinevirtual
getComments(size_t sequenceIndex) const =0	bpp::AbstractValuesContainer	pure virtual
bpp::OrderedValuesContainer::getComments(const std::string &name) const=0	bpp::OrderedValuesContainer
bpp::SequencedValuesContainer::getComments(const std::string &name) const =0	bpp::SequencedValuesContainer	pure virtual
bpp::Commentable::getComments() const	bpp::Commentable	inline
getGeneralComments() const	bpp::AbstractValuesContainer	inlinevirtual
getName(size_t sequenceIndex) const =0	bpp::OrderedValuesContainer	pure virtual
getNumberOfSequences() const =0	bpp::SequencedValuesContainer	pure virtual
getSequenceNames() const =0	bpp::SequencedValuesContainer	pure virtual
getSequencePosition(const std::string &name) const =0	bpp::OrderedValuesContainer	pure virtual
getStateValueAt(size_t siteIndex, size_t sequenceIndex, int state) const =0	bpp::OrderedValuesContainer	pure virtual
getStateValueAt(size_t siteIndex, const std::string &sequenceName, int state) const=0	bpp::OrderedValuesContainer
bpp::SequencedValuesContainer::getStateValueAt(size_t siteIndex, const std::string &sequenceName, int state) const =0	bpp::SequencedValuesContainer	pure virtual
hasSequence(const std::string &name) const =0	bpp::SequencedValuesContainer	pure virtual
operator()(size_t siteIndex, size_t sequenceIndex, int state) const =0	bpp::OrderedValuesContainer	pure virtual
bpp::SequencedValuesContainer::operator()(size_t siteIndex, const std::string &sequenceName, int state) const =0	bpp::SequencedValuesContainer	pure virtual
operator=(const AbstractValuesContainer &sc)	bpp::AbstractValuesContainer	inline
bpp::Commentable::operator=(const Commentable &com)	bpp::Commentable	inline
OrderedValuesContainer()	bpp::OrderedValuesContainer	inline
setComments(const std::string &name, const Comments &comments)	bpp::AbstractValuesContainer	inlinevirtual
setComments(size_t sequenceIndex, const Comments &comments)=0	bpp::AbstractValuesContainer	pure virtual
bpp::OrderedValuesContainer::setComments(const std::string &name, const Comments &comments)=0	bpp::OrderedValuesContainer
bpp::Commentable::setComments(const Comments &comments)	bpp::Commentable	inline
setGeneralComments(const Comments &comments)	bpp::AbstractValuesContainer	inlinevirtual
setSequenceNames(const std::vector< std::string > &names, bool checkNames)=0	bpp::SequencedValuesContainer	pure virtual
toString(size_t sequenceIndex) const =0	bpp::OrderedValuesContainer	pure virtual
toString(const std::string &name) const=0	bpp::OrderedValuesContainer
bpp::SequencedValuesContainer::toString(const std::string &name) const =0	bpp::SequencedValuesContainer	pure virtual
~AbstractValuesContainer()	bpp::AbstractValuesContainer	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~Commentable()	bpp::Commentable	inlinevirtual
~OrderedValuesContainer()	bpp::OrderedValuesContainer	inlinevirtual