addElement(const std::vector< double > &element) | bpp::BasicProbabilisticSymbolList | virtual |
addElement(size_t pos, const std::vector< double > &element) | bpp::BasicProbabilisticSymbolList | virtual |
alphabet_ | bpp::BasicProbabilisticSymbolList | private |
BasicProbabilisticSymbolList(const Alphabet *alpha) | bpp::BasicProbabilisticSymbolList | |
BasicProbabilisticSymbolList(const DataTable &list, const Alphabet *alpha) | bpp::BasicProbabilisticSymbolList | |
BasicProbabilisticSymbolList(const ProbabilisticSymbolList &list) | bpp::BasicProbabilisticSymbolList | |
BasicProbabilisticSymbolList(const CruxSymbolList &list) | bpp::BasicProbabilisticSymbolList | |
BasicProbabilisticSymbolList(const BasicProbabilisticSymbolList &list) | bpp::BasicProbabilisticSymbolList | |
clone() const | bpp::BasicProbabilisticSymbolList | inlinevirtual |
content_ | bpp::BasicProbabilisticSymbolList | protected |
DataTable typedef | bpp::BasicProbabilisticSymbolList | |
deleteElement(size_t pos) | bpp::BasicProbabilisticSymbolList | inlinevirtual |
deleteElements(size_t pos, size_t len) | bpp::BasicProbabilisticSymbolList | inlinevirtual |
getAlphabet() const | bpp::BasicProbabilisticSymbolList | inlinevirtual |
getContent() const | bpp::BasicProbabilisticSymbolList | inlinevirtual |
getElement(size_t pos) const | bpp::BasicProbabilisticSymbolList | inlinevirtual |
getStateValueAt(size_t siteIndex, int state) const | bpp::BasicProbabilisticSymbolList | inlinevirtual |
getTable() const | bpp::BasicProbabilisticSymbolList | inlinevirtual |
getValue(size_t pos) const | bpp::BasicProbabilisticSymbolList | inlinevirtual |
operator()(size_t siteIndex, int state) const | bpp::BasicProbabilisticSymbolList | inlinevirtual |
operator=(const ProbabilisticSymbolList &list) | bpp::BasicProbabilisticSymbolList | |
operator=(const BasicProbabilisticSymbolList &list) | bpp::BasicProbabilisticSymbolList | |
operator[](size_t pos) const | bpp::BasicProbabilisticSymbolList | inlinevirtual |
operator[](size_t pos) | bpp::BasicProbabilisticSymbolList | inlinevirtual |
ProbabilisticSymbolList() | bpp::ProbabilisticSymbolList | inline |
setContent(const std::vector< std::vector< double > > &list) | bpp::BasicProbabilisticSymbolList | virtual |
setContent(const DataTable &list) | bpp::BasicProbabilisticSymbolList | |
setElement(size_t pos, const std::vector< double > &element) | bpp::BasicProbabilisticSymbolList | virtual |
shuffle() | bpp::BasicProbabilisticSymbolList | inlinevirtual |
size() const | bpp::BasicProbabilisticSymbolList | inlinevirtual |
toString() const | bpp::BasicProbabilisticSymbolList | virtual |
~BasicProbabilisticSymbolList() | bpp::BasicProbabilisticSymbolList | inlinevirtual |
~Clonable()=default | bpp::Clonable | virtual |
~CoreSymbolList() | bpp::CoreSymbolList< std::vector< double > > | inlinevirtual |
~CruxSymbolList() | bpp::CruxSymbolList | inlinevirtual |
~ProbabilisticSymbolList() | bpp::ProbabilisticSymbolList | inlinevirtual |