bpp::CoreWordAlphabet Member List

This is the complete list of members for bpp::CoreWordAlphabet, including all inherited members.

containsGap(const std::string &state) const =0	bpp::CoreWordAlphabet	privatepure virtual
containsUnresolved(const std::string &state) const =0	bpp::CoreWordAlphabet	privatepure virtual
CoreWordAlphabet()	bpp::CoreWordAlphabet	inline
getLength() const =0	bpp::CoreWordAlphabet	pure virtual
getNAlphabet(size_t n) const =0	bpp::CoreWordAlphabet	pure virtual
getNPosition(int word, size_t n) const =0	bpp::CoreWordAlphabet	pure virtual
getNPosition(const std::string &word, size_t n) const =0	bpp::CoreWordAlphabet	pure virtual
getPositions(int word) const =0	bpp::CoreWordAlphabet	pure virtual
getPositions(const std::string &word) const =0	bpp::CoreWordAlphabet	pure virtual
getSize() const =0	bpp::CoreWordAlphabet	pure virtual
getWord(const Sequence &seq, size_t pos=0) const =0	bpp::CoreWordAlphabet	pure virtual
getWord(const std::vector< int > &vint, size_t pos=0) const =0	bpp::CoreWordAlphabet	pure virtual
getWord(const std::vector< std::string > &vpos, size_t pos=0) const =0	bpp::CoreWordAlphabet	pure virtual
hasUniqueAlphabet() const =0	bpp::CoreWordAlphabet	pure virtual
reverse(const SequenceInterface &sequence) const =0	bpp::CoreWordAlphabet	pure virtual
translate(const SequenceInterface &sequence, size_t pos=0) const =0	bpp::CoreWordAlphabet	pure virtual
~CoreWordAlphabet()	bpp::CoreWordAlphabet	inlinevirtual