bpp-seq3
3.0.0
|
This is the complete list of members for bpp::DCSE, including all inherited members.
AbstractIAlignment() | bpp::AbstractIAlignment | inline |
AbstractIAlignment2() | bpp::AbstractIAlignment2 | inline |
appendAlignmentFromFile(const std::string &path, SequenceContainerInterface &sc) const | bpp::AbstractIAlignment | inlineprotectedvirtual |
appendAlignmentFromStream(std::istream &input, SequenceContainerInterface &sc) const override | bpp::DCSE | virtual |
DCSE() | bpp::DCSE | inline |
getDataType() const | bpp::IOSequence | inlinevirtual |
getFormatDescription() const override | bpp::DCSE | virtual |
getFormatName() const override | bpp::DCSE | virtual |
IAlignment() | bpp::IAlignment | inline |
IOFormat() | bpp::IOFormat | |
IOSequence() | bpp::IOSequence | inline |
ISequence() | bpp::ISequence | inline |
readAlignment(std::istream &input, SequenceContainerInterface &sc) const override | bpp::AbstractIAlignment | inlinevirtual |
readAlignment(const std::string &path, SequenceContainerInterface &sc) const override | bpp::AbstractIAlignment | inlinevirtual |
readAlignment(const std::string &path, std::shared_ptr< const Alphabet > alpha) const override | bpp::AbstractIAlignment | inlinevirtual |
readAlignment(std::istream &input, std::shared_ptr< const Alphabet > alpha) const override | bpp::AbstractIAlignment | inlinevirtual |
readAlignmentFromFile(const std::string &path, std::shared_ptr< const Alphabet > alpha) const | bpp::AbstractIAlignment | inlineprotectedvirtual |
readAlignmentFromStream(std::istream &input, std::shared_ptr< const Alphabet > alpha) const | bpp::AbstractIAlignment | inlineprotectedvirtual |
readSequences(std::istream &input, std::shared_ptr< const Alphabet > alpha) const override | bpp::DCSE | inlinevirtual |
readSequences(const std::string &path, std::shared_ptr< const Alphabet > alpha) const override | bpp::DCSE | inlinevirtual |
bpp::AbstractIAlignment2::readSequences(std::istream &input, SequenceContainerInterface &sc) const override | bpp::AbstractIAlignment2 | inlinevirtual |
bpp::AbstractIAlignment2::readSequences(const std::string &path, SequenceContainerInterface &sc) const override | bpp::AbstractIAlignment2 | inlinevirtual |
~AbstractIAlignment() | bpp::AbstractIAlignment | inlinevirtual |
~AbstractIAlignment2() | bpp::AbstractIAlignment2 | inlinevirtual |
~DCSE() | bpp::DCSE | inlinevirtual |
~IAlignment() | bpp::IAlignment | inlinevirtual |
~IOFormat() | bpp::IOFormat | virtual |
~IOSequence() | bpp::IOSequence | inlinevirtual |
~ISequence() | bpp::ISequence | inlinevirtual |