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bpp-seq3
3.0.0
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This is the complete list of members for bpp::DCSE, including all inherited members.
| AbstractIAlignment() | bpp::AbstractIAlignment | inline |
| AbstractIAlignment2() | bpp::AbstractIAlignment2 | inline |
| appendAlignmentFromFile(const std::string &path, SequenceContainerInterface &sc) const | bpp::AbstractIAlignment | inlineprotectedvirtual |
| appendAlignmentFromStream(std::istream &input, SequenceContainerInterface &sc) const override | bpp::DCSE | virtual |
| DCSE() | bpp::DCSE | inline |
| getDataType() const | bpp::IOSequence | inlinevirtual |
| getFormatDescription() const override | bpp::DCSE | virtual |
| getFormatName() const override | bpp::DCSE | virtual |
| IAlignment() | bpp::IAlignment | inline |
| IOFormat() | bpp::IOFormat | |
| IOSequence() | bpp::IOSequence | inline |
| ISequence() | bpp::ISequence | inline |
| readAlignment(std::istream &input, SequenceContainerInterface &sc) const override | bpp::AbstractIAlignment | inlinevirtual |
| readAlignment(const std::string &path, SequenceContainerInterface &sc) const override | bpp::AbstractIAlignment | inlinevirtual |
| readAlignment(const std::string &path, std::shared_ptr< const Alphabet > alpha) const override | bpp::AbstractIAlignment | inlinevirtual |
| readAlignment(std::istream &input, std::shared_ptr< const Alphabet > alpha) const override | bpp::AbstractIAlignment | inlinevirtual |
| readAlignmentFromFile(const std::string &path, std::shared_ptr< const Alphabet > alpha) const | bpp::AbstractIAlignment | inlineprotectedvirtual |
| readAlignmentFromStream(std::istream &input, std::shared_ptr< const Alphabet > alpha) const | bpp::AbstractIAlignment | inlineprotectedvirtual |
| readSequences(std::istream &input, std::shared_ptr< const Alphabet > alpha) const override | bpp::DCSE | inlinevirtual |
| readSequences(const std::string &path, std::shared_ptr< const Alphabet > alpha) const override | bpp::DCSE | inlinevirtual |
| bpp::AbstractIAlignment2::readSequences(std::istream &input, SequenceContainerInterface &sc) const override | bpp::AbstractIAlignment2 | inlinevirtual |
| bpp::AbstractIAlignment2::readSequences(const std::string &path, SequenceContainerInterface &sc) const override | bpp::AbstractIAlignment2 | inlinevirtual |
| ~AbstractIAlignment() | bpp::AbstractIAlignment | inlinevirtual |
| ~AbstractIAlignment2() | bpp::AbstractIAlignment2 | inlinevirtual |
| ~DCSE() | bpp::DCSE | inlinevirtual |
| ~IAlignment() | bpp::IAlignment | inlinevirtual |
| ~IOFormat() | bpp::IOFormat | virtual |
| ~IOSequence() | bpp::IOSequence | inlinevirtual |
| ~ISequence() | bpp::ISequence | inlinevirtual |