bpp::GeneticCode Member List

This is the complete list of members for bpp::GeneticCode, including all inherited members.

AbstractTransliterator()	bpp::AbstractTransliterator	inline
areSynonymous(int i, int j) const	bpp::GeneticCode	inline
areSynonymous(const std::string &i, const std::string &j) const	bpp::GeneticCode	inline
clone() const override=0	bpp::GeneticCode	pure virtual
codonAlphabet() const	bpp::GeneticCode	inlinevirtual
codonAlphabet_	bpp::GeneticCode	protected
GeneticCode(std::shared_ptr< const NucleicAlphabet > alphabet)	bpp::GeneticCode	inline
getCodingSequence(const SequenceInterface &sequence, bool lookForInitCodon=false, bool includeInitCodon=false) const	bpp::GeneticCode
getCodonAlphabet() const	bpp::GeneticCode	inlinevirtual
getNumberOfStopCodons() const =0	bpp::GeneticCode	pure virtual
getProteicAlphabet() const	bpp::GeneticCode	inlinevirtual
getSourceAlphabet() const override	bpp::GeneticCode	inlinevirtual
getStopCodonsAsChar() const =0	bpp::GeneticCode	pure virtual
getStopCodonsAsInt() const =0	bpp::GeneticCode	pure virtual
getSynonymous(int aminoacid) const	bpp::GeneticCode
getSynonymous(const std::string &aminoacid) const	bpp::GeneticCode
getTargetAlphabet() const override	bpp::GeneticCode	inlinevirtual
isAltStart(int state) const =0	bpp::GeneticCode	pure virtual
isAltStart(const std::string &state) const =0	bpp::GeneticCode	pure virtual
isFourFoldDegenerated(int codon) const	bpp::GeneticCode
isStart(int state) const	bpp::GeneticCode	inlinevirtual
isStart(const std::string &state) const	bpp::GeneticCode	inlinevirtual
isStop(int state) const =0	bpp::GeneticCode	pure virtual
isStop(const std::string &state) const =0	bpp::GeneticCode	pure virtual
proteicAlphabet() const	bpp::GeneticCode	inlinevirtual
proteicAlphabet_	bpp::GeneticCode	protected
sourceAlphabet() const override	bpp::GeneticCode	inlinevirtual
targetAlphabet() const override	bpp::GeneticCode	inlinevirtual
tlnTable_	bpp::GeneticCode	protected
translate(int state) const override	bpp::GeneticCode	virtual
translate(const std::string &state) const override	bpp::GeneticCode	virtual
translate(const SequenceInterface &sequence) const override	bpp::GeneticCode	inlinevirtual
TransliteratorInterface()	bpp::TransliteratorInterface	inline
~AbstractTransliterator()	bpp::AbstractTransliterator	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~GeneticCode()	bpp::GeneticCode	inlinevirtual
~TransliteratorInterface()	bpp::TransliteratorInterface	inlinevirtual