alpha_ | bpp::ProteicAlphabetIndex2 | private |
alphabet() const override | bpp::ProteicAlphabetIndex2 | inlinevirtual |
AlphabetIndex2() | bpp::AlphabetIndex2 | inline |
clone() const override | bpp::GranthamAAChemicalDistance | inlinevirtual |
computeIndexMatrix_() | bpp::GranthamAAChemicalDistance | protected |
distanceMatrix_ | bpp::GranthamAAChemicalDistance | private |
getAlphabet() const override | bpp::ProteicAlphabetIndex2 | inlinevirtual |
getIndex(int state1, int state2) const override | bpp::GranthamAAChemicalDistance | virtual |
getIndex(const std::string &state1, const std::string &state2) const override | bpp::GranthamAAChemicalDistance | virtual |
getIndexMatrix() const override | bpp::GranthamAAChemicalDistance | inlinevirtual |
GranthamAAChemicalDistance() | bpp::GranthamAAChemicalDistance | |
GranthamAAChemicalDistance(const GranthamAAChemicalDistance &gd) | bpp::GranthamAAChemicalDistance | inline |
indexMatrix_ | bpp::GranthamAAChemicalDistance | private |
isSymmetric() const override | bpp::GranthamAAChemicalDistance | inlinevirtual |
operator=(const GranthamAAChemicalDistance &gd) | bpp::GranthamAAChemicalDistance | inline |
bpp::ProteicAlphabetIndex2::operator=(const ProteicAlphabetIndex2 &pt) | bpp::ProteicAlphabetIndex2 | inline |
ProteicAlphabetIndex2() | bpp::ProteicAlphabetIndex2 | inline |
ProteicAlphabetIndex2(const ProteicAlphabetIndex2 &pt) | bpp::ProteicAlphabetIndex2 | inline |
setPC1Sign(bool yn) | bpp::GranthamAAChemicalDistance | inline |
setSymmetric(bool yn) | bpp::GranthamAAChemicalDistance | inline |
sign_ | bpp::GranthamAAChemicalDistance | private |
SIGN_ARBITRARY | bpp::GranthamAAChemicalDistance | static |
SIGN_NONE | bpp::GranthamAAChemicalDistance | static |
SIGN_PC1 | bpp::GranthamAAChemicalDistance | static |
signMatrix_ | bpp::GranthamAAChemicalDistance | private |
~AlphabetIndex2() | bpp::AlphabetIndex2 | inlinevirtual |
~Clonable()=default | bpp::Clonable | virtual |
~GranthamAAChemicalDistance() | bpp::GranthamAAChemicalDistance | inlinevirtual |
~ProteicAlphabetIndex2() | bpp::ProteicAlphabetIndex2 | inlinevirtual |