bpp-seq3  3.0.0
bpp::GranthamAAChemicalDistance Member List

This is the complete list of members for bpp::GranthamAAChemicalDistance, including all inherited members.

alpha_bpp::ProteicAlphabetIndex2private
alphabet() const overridebpp::ProteicAlphabetIndex2inlinevirtual
AlphabetIndex2()bpp::AlphabetIndex2inline
clone() const overridebpp::GranthamAAChemicalDistanceinlinevirtual
computeIndexMatrix_()bpp::GranthamAAChemicalDistanceprotected
distanceMatrix_bpp::GranthamAAChemicalDistanceprivate
getAlphabet() const overridebpp::ProteicAlphabetIndex2inlinevirtual
getIndex(int state1, int state2) const overridebpp::GranthamAAChemicalDistancevirtual
getIndex(const std::string &state1, const std::string &state2) const overridebpp::GranthamAAChemicalDistancevirtual
getIndexMatrix() const overridebpp::GranthamAAChemicalDistanceinlinevirtual
GranthamAAChemicalDistance()bpp::GranthamAAChemicalDistance
GranthamAAChemicalDistance(const GranthamAAChemicalDistance &gd)bpp::GranthamAAChemicalDistanceinline
indexMatrix_bpp::GranthamAAChemicalDistanceprivate
isSymmetric() const overridebpp::GranthamAAChemicalDistanceinlinevirtual
operator=(const GranthamAAChemicalDistance &gd)bpp::GranthamAAChemicalDistanceinline
bpp::ProteicAlphabetIndex2::operator=(const ProteicAlphabetIndex2 &pt)bpp::ProteicAlphabetIndex2inline
ProteicAlphabetIndex2()bpp::ProteicAlphabetIndex2inline
ProteicAlphabetIndex2(const ProteicAlphabetIndex2 &pt)bpp::ProteicAlphabetIndex2inline
setPC1Sign(bool yn)bpp::GranthamAAChemicalDistanceinline
setSymmetric(bool yn)bpp::GranthamAAChemicalDistanceinline
sign_bpp::GranthamAAChemicalDistanceprivate
SIGN_ARBITRARYbpp::GranthamAAChemicalDistancestatic
SIGN_NONEbpp::GranthamAAChemicalDistancestatic
SIGN_PC1bpp::GranthamAAChemicalDistancestatic
signMatrix_bpp::GranthamAAChemicalDistanceprivate
~AlphabetIndex2()bpp::AlphabetIndex2inlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~GranthamAAChemicalDistance()bpp::GranthamAAChemicalDistanceinlinevirtual
~ProteicAlphabetIndex2()bpp::ProteicAlphabetIndex2inlinevirtual