alpha_ | bpp::ProteicAlphabetIndex2 | private |
alphabet() const override | bpp::ProteicAlphabetIndex2 | inlinevirtual |
AlphabetIndex2() | bpp::AlphabetIndex2 | inline |
clone() const override | bpp::MiyataAAChemicalDistance | inlinevirtual |
computeIndexMatrix_() | bpp::MiyataAAChemicalDistance | protected |
distanceMatrix_ | bpp::MiyataAAChemicalDistance | private |
getAlphabet() const override | bpp::ProteicAlphabetIndex2 | inlinevirtual |
getIndex(int state1, int state2) const override | bpp::MiyataAAChemicalDistance | virtual |
getIndex(const std::string &state1, const std::string &state2) const override | bpp::MiyataAAChemicalDistance | virtual |
getIndexMatrix() const override | bpp::MiyataAAChemicalDistance | inlinevirtual |
indexMatrix_ | bpp::MiyataAAChemicalDistance | private |
isSymmetric() const override | bpp::MiyataAAChemicalDistance | inlinevirtual |
MiyataAAChemicalDistance() | bpp::MiyataAAChemicalDistance | |
MiyataAAChemicalDistance(const MiyataAAChemicalDistance &md) | bpp::MiyataAAChemicalDistance | inline |
operator=(const MiyataAAChemicalDistance &md) | bpp::MiyataAAChemicalDistance | inline |
bpp::ProteicAlphabetIndex2::operator=(const ProteicAlphabetIndex2 &pt) | bpp::ProteicAlphabetIndex2 | inline |
ProteicAlphabetIndex2() | bpp::ProteicAlphabetIndex2 | inline |
ProteicAlphabetIndex2(const ProteicAlphabetIndex2 &pt) | bpp::ProteicAlphabetIndex2 | inline |
setSymmetric(bool yn) | bpp::MiyataAAChemicalDistance | inline |
sym_ | bpp::MiyataAAChemicalDistance | private |
~AlphabetIndex2() | bpp::AlphabetIndex2 | inlinevirtual |
~Clonable()=default | bpp::Clonable | virtual |
~MiyataAAChemicalDistance() | bpp::MiyataAAChemicalDistance | inlinevirtual |
~ProteicAlphabetIndex2() | bpp::ProteicAlphabetIndex2 | inlinevirtual |