bpp::NexusIOSequence Member List

This is the complete list of members for bpp::NexusIOSequence, including all inherited members.

AbstractIAlignment()	bpp::AbstractIAlignment	inline
AbstractIAlignment2()	bpp::AbstractIAlignment2	inline
appendAlignmentFromFile(const std::string &path, SequenceContainerInterface &sc) const	bpp::AbstractIAlignment	inlineprotectedvirtual
appendAlignmentFromStream(std::istream &input, SequenceContainerInterface &sc) const override	bpp::NexusIOSequence	virtual
charsByLine_	bpp::NexusIOSequence	protected
checkNames() const	bpp::NexusIOSequence	inline
checkNames(bool yn)	bpp::NexusIOSequence	inline
checkNames_	bpp::NexusIOSequence	protected
getDataType() const	bpp::IOSequence	inlinevirtual
getFormatDescription() const override	bpp::NexusIOSequence	virtual
getFormatName() const override	bpp::NexusIOSequence	virtual
IAlignment()	bpp::IAlignment	inline
IOFormat()	bpp::IOFormat
IOSequence()	bpp::IOSequence	inline
bpp::ISequence()	bpp::ISequence	inline
bpp::ISequence::ISequence()	bpp::ISequence	inline
NexusIOSequence(unsigned int charsByLine=100, bool checkSequenceNames=true)	bpp::NexusIOSequence	inline
readAlignment(std::istream &input, SequenceContainerInterface &sc) const override	bpp::AbstractIAlignment	inlinevirtual
readAlignment(const std::string &path, SequenceContainerInterface &sc) const override	bpp::AbstractIAlignment	inlinevirtual
readAlignment(const std::string &path, std::shared_ptr< const Alphabet > alpha) const override	bpp::AbstractIAlignment	inlinevirtual
readAlignment(std::istream &input, std::shared_ptr< const Alphabet > alpha) const override	bpp::AbstractIAlignment	inlinevirtual
readAlignmentFromFile(const std::string &path, std::shared_ptr< const Alphabet > alpha) const	bpp::AbstractIAlignment	inlineprotectedvirtual
readAlignmentFromStream(std::istream &input, std::shared_ptr< const Alphabet > alpha) const	bpp::AbstractIAlignment	inlineprotectedvirtual
readSequences(std::istream &input, SequenceContainerInterface &sc) const override	bpp::AbstractIAlignment2	inlinevirtual
readSequences(const std::string &path, SequenceContainerInterface &sc) const override	bpp::AbstractIAlignment2	inlinevirtual
readSequences(std::istream &input, std::shared_ptr< const Alphabet > alpha) const override	bpp::AbstractIAlignment2	inlinevirtual
readSequences(const std::string &path, std::shared_ptr< const Alphabet > alpha) const override	bpp::AbstractIAlignment2	inlinevirtual
splitNameAndSequence_(const std::string &s) const	bpp::NexusIOSequence	private
~AbstractIAlignment()	bpp::AbstractIAlignment	inlinevirtual
~AbstractIAlignment2()	bpp::AbstractIAlignment2	inlinevirtual
~IAlignment()	bpp::IAlignment	inlinevirtual
~IOFormat()	bpp::IOFormat	virtual
~IOSequence()	bpp::IOSequence	inlinevirtual
~ISequence()	bpp::ISequence	inlinevirtual
~NexusIOSequence()	bpp::NexusIOSequence	inlinevirtual