bpp-seq3  3.0.0
bpp::PhredPhd Member List

This is the complete list of members for bpp::PhredPhd, including all inherited members.

getDataType() constbpp::PhredPhdinlinevirtual
getFormatDescription() constbpp::PhredPhdinlinevirtual
getFormatName() constbpp::PhredPhdinlinevirtual
IOFormat()bpp::IOFormat
IOSequenceStream()bpp::IOSequenceStreaminline
nextSequence(std::istream &input, Sequence &seq) constbpp::PhredPhd
nextSequence(std::istream &input, Sequence &seq, std::vector< size_t > &pos) constbpp::PhredPhd
bpp::TemplateISequenceStream::nextSequence(std::istream &input, SequenceType &seq) const =0bpp::TemplateISequenceStream< SequenceType >pure virtual
parseDNA_(std::istream &input, std::string &sequence, std::vector< int > &qual, std::vector< size_t > &pos) constbpp::PhredPhdprivate
parseFile_(std::istream &input, std::string &name, std::string &sequence, std::vector< int > &qual, std::vector< size_t > &pos) constbpp::PhredPhdprivate
PhredPhd()bpp::PhredPhdinline
TemplateISequenceStream()bpp::TemplateISequenceStream< SequenceType >inline
~IOFormat()bpp::IOFormatvirtual
~IOSequenceStream()bpp::IOSequenceStreaminlinevirtual
~PhredPhd()bpp::PhredPhdinlinevirtual
~TemplateISequenceStream()bpp::TemplateISequenceStream< SequenceType >inlinevirtual