addElement(const T &c)=0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
addElement(size_t pos, const T &c)=0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
alphabet() const =0 | bpp::CruxSymbolListInterface | pure virtual |
clone() const =0 | bpp::ProbabilisticSiteInterface | pure virtual |
deleteElement(size_t pos)=0 | bpp::CruxSymbolListInterface | pure virtual |
deleteElements(size_t pos, size_t len)=0 | bpp::CruxSymbolListInterface | pure virtual |
DTable typedef | bpp::ProbabilisticSymbolListInterface | |
getAlphabet() const =0 | bpp::CruxSymbolListInterface | pure virtual |
getContent() const =0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
getCoordinate() const =0 | bpp::CoreSiteInterface | pure virtual |
getElement(size_t pos) const =0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
getStateValueAt(size_t sequencePosition, int state) const override=0 | bpp::CoreSiteInterface | pure virtual |
getTable() const =0 | bpp::ProbabilisticSymbolListInterface | pure virtual |
getValue(size_t pos) const =0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
operator()(size_t position, int state) const =0 | bpp::CruxSymbolListInterface | pure virtual |
operator[](size_t pos) const =0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
operator[](size_t pos)=0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
ProbabilisticSymbolListInterface() | bpp::ProbabilisticSymbolListInterface | inline |
setContent(const DTable &list)=0 | bpp::ProbabilisticSymbolListInterface | pure virtual |
setContent(const std::vector< T > &list)=0 | bpp::ProbabilisticSymbolListInterface | |
bpp::TemplateCoreSymbolListInterface::setContent(const std::vector< T > &list)=0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
setCoordinate(int coordinate)=0 | bpp::CoreSiteInterface | pure virtual |
setElement(size_t pos, const T &c)=0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
shuffle()=0 | bpp::CruxSymbolListInterface | pure virtual |
size() const =0 | bpp::CruxSymbolListInterface | pure virtual |
SymbolType typedef | bpp::ProbabilisticSymbolListInterface | |
toString() const =0 | bpp::CruxSymbolListInterface | pure virtual |
~Clonable()=default | bpp::Clonable | virtual |
~CoreSiteInterface() | bpp::CoreSiteInterface | inlinevirtual |
~CruxSymbolListInterface() | bpp::CruxSymbolListInterface | inlinevirtual |
~ProbabilisticSiteInterface() | bpp::ProbabilisticSiteInterface | inlinevirtual |
~ProbabilisticSymbolListInterface() | bpp::ProbabilisticSymbolListInterface | inlinevirtual |
~TemplateCoreSymbolListInterface() | bpp::TemplateCoreSymbolListInterface< T > | inlinevirtual |