bpp-seq3  3.0.0
bpp::ProbabilisticSiteInterface Member List

This is the complete list of members for bpp::ProbabilisticSiteInterface, including all inherited members.

addElement(const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
addElement(size_t pos, const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
alphabet() const =0bpp::CruxSymbolListInterfacepure virtual
clone() const =0bpp::ProbabilisticSiteInterfacepure virtual
deleteElement(size_t pos)=0bpp::CruxSymbolListInterfacepure virtual
deleteElements(size_t pos, size_t len)=0bpp::CruxSymbolListInterfacepure virtual
DTable typedefbpp::ProbabilisticSymbolListInterface
getAlphabet() const =0bpp::CruxSymbolListInterfacepure virtual
getContent() const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
getCoordinate() const =0bpp::CoreSiteInterfacepure virtual
getElement(size_t pos) const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
getStateValueAt(size_t sequencePosition, int state) const override=0bpp::CoreSiteInterfacepure virtual
getTable() const =0bpp::ProbabilisticSymbolListInterfacepure virtual
getValue(size_t pos) const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
operator()(size_t position, int state) const =0bpp::CruxSymbolListInterfacepure virtual
operator[](size_t pos) const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
operator[](size_t pos)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
ProbabilisticSymbolListInterface()bpp::ProbabilisticSymbolListInterfaceinline
setContent(const DTable &list)=0bpp::ProbabilisticSymbolListInterfacepure virtual
setContent(const std::vector< T > &list)=0bpp::ProbabilisticSymbolListInterface
bpp::TemplateCoreSymbolListInterface::setContent(const std::vector< T > &list)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
setCoordinate(int coordinate)=0bpp::CoreSiteInterfacepure virtual
setElement(size_t pos, const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
shuffle()=0bpp::CruxSymbolListInterfacepure virtual
size() const =0bpp::CruxSymbolListInterfacepure virtual
SymbolType typedefbpp::ProbabilisticSymbolListInterface
toString() const =0bpp::CruxSymbolListInterfacepure virtual
~Clonable()=defaultbpp::Clonablevirtual
~CoreSiteInterface()bpp::CoreSiteInterfaceinlinevirtual
~CruxSymbolListInterface()bpp::CruxSymbolListInterfaceinlinevirtual
~ProbabilisticSiteInterface()bpp::ProbabilisticSiteInterfaceinlinevirtual
~ProbabilisticSymbolListInterface()bpp::ProbabilisticSymbolListInterfaceinlinevirtual
~TemplateCoreSymbolListInterface()bpp::TemplateCoreSymbolListInterface< T >inlinevirtual