bpp-seq3  3.0.0
bpp::ProbabilisticSymbolList Member List

This is the complete list of members for bpp::ProbabilisticSymbolList, including all inherited members.

addElement(const std::vector< double > &element) overridebpp::ProbabilisticSymbolList
addElement(size_t pos, const std::vector< double > &element) overridebpp::ProbabilisticSymbolList
bpp::ProbabilisticSymbolListInterface::addElement(const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
bpp::ProbabilisticSymbolListInterface::addElement(size_t pos, const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
alphabet() const overridebpp::ProbabilisticSymbolListinlinevirtual
alphabet_bpp::ProbabilisticSymbolListprivate
clone() const overridebpp::ProbabilisticSymbolListinlinevirtual
content_bpp::ProbabilisticSymbolListprotected
deleteElement(size_t pos) overridebpp::ProbabilisticSymbolListinlinevirtual
deleteElements(size_t pos, size_t len) overridebpp::ProbabilisticSymbolListinlinevirtual
DTable typedefbpp::ProbabilisticSymbolListInterface
getAlphabet() const overridebpp::ProbabilisticSymbolListinlinevirtual
getContent() const overridebpp::ProbabilisticSymbolListinlinevirtual
getElement(size_t pos) const overridebpp::ProbabilisticSymbolListinlinevirtual
getStateValueAt(size_t siteIndex, int state) const overridebpp::ProbabilisticSymbolListinlinevirtual
getTable() const overridebpp::ProbabilisticSymbolListinlinevirtual
getValue(size_t pos) const overridebpp::ProbabilisticSymbolListinlinevirtual
operator()(size_t siteIndex, int state) const overridebpp::ProbabilisticSymbolListinlinevirtual
operator=(const ProbabilisticSymbolListInterface &list)bpp::ProbabilisticSymbolList
operator=(const ProbabilisticSymbolList &list)bpp::ProbabilisticSymbolList
operator[](size_t pos) const overridebpp::ProbabilisticSymbolListinlinevirtual
operator[](size_t pos) overridebpp::ProbabilisticSymbolListinlinevirtual
ProbabilisticSymbolList(std::shared_ptr< const Alphabet > &alpha)bpp::ProbabilisticSymbolList
ProbabilisticSymbolList(const DTable &list, std::shared_ptr< const Alphabet > &alpha)bpp::ProbabilisticSymbolList
ProbabilisticSymbolList(const std::vector< std::vector< double >> &list, std::shared_ptr< const Alphabet > &alpha)bpp::ProbabilisticSymbolList
ProbabilisticSymbolList(const ProbabilisticSymbolListInterface &list)bpp::ProbabilisticSymbolList
ProbabilisticSymbolList(const CruxSymbolListInterface &list)bpp::ProbabilisticSymbolList
ProbabilisticSymbolList(const ProbabilisticSymbolList &list)bpp::ProbabilisticSymbolList
ProbabilisticSymbolListInterface()bpp::ProbabilisticSymbolListInterfaceinline
setContent(const std::vector< std::vector< double >> &list) overridebpp::ProbabilisticSymbolList
setContent(const DTable &list) overridebpp::ProbabilisticSymbolListvirtual
bpp::ProbabilisticSymbolListInterface::setContent(const std::vector< T > &list)=0bpp::ProbabilisticSymbolListInterface
bpp::TemplateCoreSymbolListInterface::setContent(const std::vector< T > &list)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
setElement(size_t pos, const std::vector< double > &element) overridebpp::ProbabilisticSymbolList
bpp::ProbabilisticSymbolListInterface::setElement(size_t pos, const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
shuffle() overridebpp::ProbabilisticSymbolListinlinevirtual
size() const overridebpp::ProbabilisticSymbolListinlinevirtual
SymbolType typedefbpp::ProbabilisticSymbolListInterface
toString() const overridebpp::ProbabilisticSymbolListvirtual
~Clonable()=defaultbpp::Clonablevirtual
~CruxSymbolListInterface()bpp::CruxSymbolListInterfaceinlinevirtual
~ProbabilisticSymbolList()bpp::ProbabilisticSymbolListinlinevirtual
~ProbabilisticSymbolListInterface()bpp::ProbabilisticSymbolListInterfaceinlinevirtual
~TemplateCoreSymbolListInterface()bpp::TemplateCoreSymbolListInterface< T >inlinevirtual