addElement(const std::vector< double > &element) override | bpp::ProbabilisticSymbolList | |
addElement(size_t pos, const std::vector< double > &element) override | bpp::ProbabilisticSymbolList | |
bpp::ProbabilisticSymbolListInterface::addElement(const T &c)=0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
bpp::ProbabilisticSymbolListInterface::addElement(size_t pos, const T &c)=0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
alphabet() const override | bpp::ProbabilisticSymbolList | inlinevirtual |
alphabet_ | bpp::ProbabilisticSymbolList | private |
clone() const override | bpp::ProbabilisticSymbolList | inlinevirtual |
content_ | bpp::ProbabilisticSymbolList | protected |
deleteElement(size_t pos) override | bpp::ProbabilisticSymbolList | inlinevirtual |
deleteElements(size_t pos, size_t len) override | bpp::ProbabilisticSymbolList | inlinevirtual |
DTable typedef | bpp::ProbabilisticSymbolListInterface | |
getAlphabet() const override | bpp::ProbabilisticSymbolList | inlinevirtual |
getContent() const override | bpp::ProbabilisticSymbolList | inlinevirtual |
getElement(size_t pos) const override | bpp::ProbabilisticSymbolList | inlinevirtual |
getStateValueAt(size_t siteIndex, int state) const override | bpp::ProbabilisticSymbolList | inlinevirtual |
getTable() const override | bpp::ProbabilisticSymbolList | inlinevirtual |
getValue(size_t pos) const override | bpp::ProbabilisticSymbolList | inlinevirtual |
operator()(size_t siteIndex, int state) const override | bpp::ProbabilisticSymbolList | inlinevirtual |
operator=(const ProbabilisticSymbolListInterface &list) | bpp::ProbabilisticSymbolList | |
operator=(const ProbabilisticSymbolList &list) | bpp::ProbabilisticSymbolList | |
operator[](size_t pos) const override | bpp::ProbabilisticSymbolList | inlinevirtual |
operator[](size_t pos) override | bpp::ProbabilisticSymbolList | inlinevirtual |
ProbabilisticSymbolList(std::shared_ptr< const Alphabet > &alpha) | bpp::ProbabilisticSymbolList | |
ProbabilisticSymbolList(const DTable &list, std::shared_ptr< const Alphabet > &alpha) | bpp::ProbabilisticSymbolList | |
ProbabilisticSymbolList(const std::vector< std::vector< double >> &list, std::shared_ptr< const Alphabet > &alpha) | bpp::ProbabilisticSymbolList | |
ProbabilisticSymbolList(const ProbabilisticSymbolListInterface &list) | bpp::ProbabilisticSymbolList | |
ProbabilisticSymbolList(const CruxSymbolListInterface &list) | bpp::ProbabilisticSymbolList | |
ProbabilisticSymbolList(const ProbabilisticSymbolList &list) | bpp::ProbabilisticSymbolList | |
ProbabilisticSymbolListInterface() | bpp::ProbabilisticSymbolListInterface | inline |
setContent(const std::vector< std::vector< double >> &list) override | bpp::ProbabilisticSymbolList | |
setContent(const DTable &list) override | bpp::ProbabilisticSymbolList | virtual |
bpp::ProbabilisticSymbolListInterface::setContent(const std::vector< T > &list)=0 | bpp::ProbabilisticSymbolListInterface | |
bpp::TemplateCoreSymbolListInterface::setContent(const std::vector< T > &list)=0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
setElement(size_t pos, const std::vector< double > &element) override | bpp::ProbabilisticSymbolList | |
bpp::ProbabilisticSymbolListInterface::setElement(size_t pos, const T &c)=0 | bpp::TemplateCoreSymbolListInterface< T > | pure virtual |
shuffle() override | bpp::ProbabilisticSymbolList | inlinevirtual |
size() const override | bpp::ProbabilisticSymbolList | inlinevirtual |
SymbolType typedef | bpp::ProbabilisticSymbolListInterface | |
toString() const override | bpp::ProbabilisticSymbolList | virtual |
~Clonable()=default | bpp::Clonable | virtual |
~CruxSymbolListInterface() | bpp::CruxSymbolListInterface | inlinevirtual |
~ProbabilisticSymbolList() | bpp::ProbabilisticSymbolList | inlinevirtual |
~ProbabilisticSymbolListInterface() | bpp::ProbabilisticSymbolListInterface | inlinevirtual |
~TemplateCoreSymbolListInterface() | bpp::TemplateCoreSymbolListInterface< T > | inlinevirtual |