bpp::SequenceContainerTools Member List

This is the complete list of members for bpp::SequenceContainerTools, including all inherited members.

append(TemplateSequenceContainerInterface< SequenceType, HashType > &seqCont1, const TemplateSequenceContainerInterface< SequenceType, HashType > &seqCont2)	bpp::SequenceContainerTools	inlinestatic
convertAlphabet(const TemplateSequenceContainerInterface< SequenceType, HashType > &seqCont, TemplateSequenceContainerInterface< SequenceType, HashType > &outputCont)	bpp::SequenceContainerTools	inlinestatic
convertContainer(const ContFrom &input, ContTo &output)	bpp::SequenceContainerTools	inlinestatic
createContainerOfSpecifiedSize(std::shared_ptr< const Alphabet > &alphabet, size_t size)	bpp::SequenceContainerTools	inlinestatic
createContainerWithSequenceNames(std::shared_ptr< const Alphabet > &alphabet, const std::vector< std::string > &seqNames)	bpp::SequenceContainerTools	inlinestatic
getCodonPosition(const TemplateSequenceContainerInterface< SequenceType, std::string > &sequences, size_t pos)	bpp::SequenceContainerTools	inlinestatic
getCounts(const SequenceContainerInterface &sc, std::map< int, unsigned int > &f)	bpp::SequenceContainerTools	inlinestatic
getFrequencies(const SequenceContainerInterface &sc, std::map< int, double > &f, double pseudoCount=0)	bpp::SequenceContainerTools	inlinestatic
getFrequencies(const ProbabilisticSequenceContainerInterface &sc, std::map< int, double > &f, double pseudoCount=0)	bpp::SequenceContainerTools	inlinestatic
getFrequencies(const SequenceDataInterface &sc, std::map< int, double > &f, double pseudoCount=0)	bpp::SequenceContainerTools	inlinestatic
getSelectedSequences(const TemplateSequenceContainerInterface< SequenceType, HashType > &sequences, const SequenceSelection &selection, TemplateSequenceContainerInterface< SequenceType, HashType > &outputCont)	bpp::SequenceContainerTools	inlinestatic
getSelectedSequences(const TemplateSequenceContainerInterface< SequenceType, HashType > &sequences, const std::vector< std::string > &selection, TemplateSequenceContainerInterface< SequenceType, HashType > &outputCont, bool strict=true)	bpp::SequenceContainerTools	inlinestatic
hasSequenceWithName(const TemplateSequenceContainerInterface< SequenceType, HashType > &sc, const std::string &name)	bpp::SequenceContainerTools	inlinestatic
keepOnlySelectedSequences(TemplateSequenceContainerInterface< SequenceType, HashType > &sequences, const SequenceSelection &selection)	bpp::SequenceContainerTools	inlinestatic
mergeByKey(const TemplateSequenceContainerInterface< SequenceType, HashType > &seqCont1, const TemplateSequenceContainerInterface< SequenceType, HashType > &seqCont2, TemplateSequenceContainerInterface< SequenceType, HashType > &outputCont)	bpp::SequenceContainerTools	inlinestatic
SequenceContainerTools()	bpp::SequenceContainerTools	inline
sequencesHaveTheSameLength(const TemplateSequenceContainerInterface< SequenceType, HashType > &sc)	bpp::SequenceContainerTools	inlinestatic
~SequenceContainerTools()	bpp::SequenceContainerTools	inlinevirtual