bpp::TemplateAlignmentDataInterface< HashType > Member List

This is the complete list of members for bpp::TemplateAlignmentDataInterface< HashType >, including all inherited members.

alphabet() const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
clear()=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
clearComments()=0	bpp::Commentable	pure virtual
clone() const override=0	bpp::TemplateAlignmentDataInterface< HashType >	pure virtual
Commentable()	bpp::Commentable	inline
createEmptyContainer() const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
deleteSequence(const std::string &sequenceKey)=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
deleteSequence(size_t sequencePosition)=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
deleteSites(size_t siteIndex, size_t length)=0	bpp::TemplateAlignmentDataInterface< HashType >	pure virtual
getAlphabet() const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
getComments() const =0	bpp::Commentable	pure virtual
getNumberOfSequences() const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
getNumberOfSites() const =0	bpp::TemplateAlignmentDataInterface< HashType >	pure virtual
getSequenceComments() const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
getSequenceKeys() const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
getSequenceNames() const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
getSequencePosition(const std::string &sequenceKey) const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
getSiteCoordinates() const =0	bpp::TemplateAlignmentDataInterface< HashType >	pure virtual
getStateValueAt(size_t sitePosition, const std::string &sequenceKey, int state) const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
getStateValueAt(size_t sitePosition, size_t sequencePosition, int state) const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
hasSequence(const std::string &sequenceKey) const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
operator()(size_t sitePosition, const std::string &sequenceKey, int state) const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
operator()(size_t sitePosition, size_t sequencePosition, int state) const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
reindexSites()=0	bpp::TemplateAlignmentDataInterface< HashType >	pure virtual
sequence(const std::string &sequenceKey) const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
sequence(size_t sequencePosition) const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
sequenceKey(size_t sequencePosition) const=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
setComments(const Comments &comments)=0	bpp::Commentable	pure virtual
setSequenceKeys(const std::vector< std::string > &sequenceKeys)=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
setSequenceNames(const std::vector< std::string > &names, bool updateKeys)=0	bpp::TemplateSequenceDataInterface< std::string >	pure virtual
setSiteCoordinates(const Vint &vCoordinates)=0	bpp::TemplateAlignmentDataInterface< HashType >	pure virtual
site(size_t siteIndex) const =0	bpp::TemplateAlignmentDataInterface< HashType >	pure virtual
TemplateAlignmentDataInterface()	bpp::TemplateAlignmentDataInterface< HashType >	inline
TemplateSequenceDataInterface()	bpp::TemplateSequenceDataInterface< std::string >	inline
~Clonable()=default	bpp::Clonable	virtual
~Commentable()	bpp::Commentable	inlinevirtual
~TemplateAlignmentDataInterface()	bpp::TemplateAlignmentDataInterface< HashType >	inlinevirtual
~TemplateSequenceDataInterface()	bpp::TemplateSequenceDataInterface< std::string >	inlinevirtual