bpp::UserAlphabetIndex2 Member List

This is the complete list of members for bpp::UserAlphabetIndex2, including all inherited members.

alph_	bpp::UserAlphabetIndex2	private
alphabet() const	bpp::UserAlphabetIndex2	inlinevirtual
AlphabetIndex2()	bpp::AlphabetIndex2	inline
clone() const	bpp::UserAlphabetIndex2	inlinevirtual
getAlphabet() const	bpp::UserAlphabetIndex2	inlinevirtual
getIndex(int state1, int state2) const	bpp::UserAlphabetIndex2	inlinevirtual
getIndex(const std::string &state1, const std::string &state2) const	bpp::UserAlphabetIndex2	inlinevirtual
getIndexMatrix() const	bpp::UserAlphabetIndex2	inlinevirtual
index_	bpp::UserAlphabetIndex2	private
isSymmetric() const	bpp::UserAlphabetIndex2	inlinevirtual
operator=(const UserAlphabetIndex2 &uAlph)	bpp::UserAlphabetIndex2	inline
setIndexMatrix(const Matrix< double > &mat)	bpp::UserAlphabetIndex2	inline
sym_	bpp::UserAlphabetIndex2	private
UserAlphabetIndex2(std::shared_ptr< const Alphabet > alph, const Matrix< double > &mat)	bpp::UserAlphabetIndex2	inline
UserAlphabetIndex2(const UserAlphabetIndex2 &uAlph)	bpp::UserAlphabetIndex2	inline
~AlphabetIndex2()	bpp::AlphabetIndex2	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~UserAlphabetIndex2()	bpp::UserAlphabetIndex2	inlinevirtual