bpp-seq3  3.0.0
bpp::UserAlphabetIndex2 Member List

This is the complete list of members for bpp::UserAlphabetIndex2, including all inherited members.

alph_bpp::UserAlphabetIndex2private
alphabet() constbpp::UserAlphabetIndex2inlinevirtual
AlphabetIndex2()bpp::AlphabetIndex2inline
clone() constbpp::UserAlphabetIndex2inlinevirtual
getAlphabet() constbpp::UserAlphabetIndex2inlinevirtual
getIndex(int state1, int state2) constbpp::UserAlphabetIndex2inlinevirtual
getIndex(const std::string &state1, const std::string &state2) constbpp::UserAlphabetIndex2inlinevirtual
getIndexMatrix() constbpp::UserAlphabetIndex2inlinevirtual
index_bpp::UserAlphabetIndex2private
isSymmetric() constbpp::UserAlphabetIndex2inlinevirtual
operator=(const UserAlphabetIndex2 &uAlph)bpp::UserAlphabetIndex2inline
setIndexMatrix(const Matrix< double > &mat)bpp::UserAlphabetIndex2inline
sym_bpp::UserAlphabetIndex2private
UserAlphabetIndex2(std::shared_ptr< const Alphabet > alph, const Matrix< double > &mat)bpp::UserAlphabetIndex2inline
UserAlphabetIndex2(const UserAlphabetIndex2 &uAlph)bpp::UserAlphabetIndex2inline
~AlphabetIndex2()bpp::AlphabetIndex2inlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~UserAlphabetIndex2()bpp::UserAlphabetIndex2inlinevirtual