Here is a list of all class members with links to the classes they belong to:

- d -

• DataTable : bpp::Pasta
• DCSE() : bpp::DCSE
• DCSE_FORMAT : bpp::IoSequenceFactory
• decodeSequence() : bpp::StringSequenceTools
• DEFAULT_ALPHABET : bpp::AlphabetTools
• DEFAULT_QUALITY_VALUE : bpp::SequenceQuality
• DefaultAlphabet() : bpp::DefaultAlphabet
• DefaultNucleotideScore() : bpp::DefaultNucleotideScore
• deleteChar() : bpp::StringSequenceTools
• deleteElement() : bpp::AbstractTemplateEventDrivenSymbolList< T > , bpp::AbstractTemplateSymbolList< T > , bpp::CruxSymbolListInterface , bpp::ProbabilisticSymbolList
• deleteElements() : bpp::AbstractTemplateEventDrivenSymbolList< T > , bpp::AbstractTemplateSymbolList< T > , bpp::CruxSymbolListInterface , bpp::ProbabilisticSymbolList
• deleteGeneralComments() : bpp::SequencedValuesContainer
• deleteObject() : bpp::MappedNamedContainer< T > , bpp::NamedContainerInterface< T > , bpp::PositionedContainerInterface< T > , bpp::VectorMappedContainer< T > , bpp::VectorPositionedContainer< T >
• deleteObjects() : bpp::VectorPositionedContainer< T >
• deleteSequence() : bpp::CompressedVectorSiteContainer , bpp::TemplateSequenceDataInterface< HashType > , bpp::TemplateVectorSequenceContainer< SequenceType > , bpp::TemplateVectorSiteContainer< SiteType, SequenceType >
• deleteSite() : bpp::CompressedVectorSiteContainer , bpp::TemplateAlignedSequenceContainer< SequenceType, SiteType > , bpp::TemplateSiteContainerInterface< SiteType, SequenceType, HashType > , bpp::TemplateVectorSiteContainer< SiteType, SequenceType >
• deleteSites() : bpp::CompressedVectorSiteContainer , bpp::TemplateAlignedSequenceContainer< SequenceType, SiteType > , bpp::TemplateAlignmentDataInterface< HashType > , bpp::TemplateSiteContainerInterface< SiteType, SequenceType, HashType > , bpp::TemplateVectorSiteContainer< SiteType, SequenceType >
• DistanceMatrix() : bpp::DistanceMatrix
• distanceMatrix_ : bpp::BLOSUM50 , bpp::DefaultNucleotideScore , bpp::GranthamAAChemicalDistance , bpp::MiyataAAChemicalDistance , bpp::SimpleScore
• distances_ : bpp::DistanceMatrix
• DNA() : bpp::DNA
• dna_ : bpp::DNAToRNA
• DNA_ : bpp::SequenceWithQualityTools
• DNA_ALPHABET : bpp::AlphabetTools
• DNA_CODON_ALPHABET : bpp::AlphabetTools
• DNARep_ : bpp::SequenceTools , bpp::SequenceWithQualityTools
• DNAToRNA() : bpp::DNAToRNA
• doDelete_ : bpp::SwitchDeleter< T >
• DTable : bpp::ProbabilisticSymbolListInterface