- s -

• sea1030_ : bpp::AASEA1030Index
• seaInf10_ : bpp::AASEAInf10Index
• seaSup30_ : bpp::AASEASup30Index
• seq_ : bpp::SequenceWalker
• seqPos_ : bpp::SequenceWalker
• seqStream_ : bpp::TemplateStreamSequenceIterator< SequenceType >
• sequence_ : bpp::AbstractSequencePositionIterator , bpp::SequenceException
• sequenceComments_ : bpp::CompressedVectorSiteContainer , bpp::TemplateVectorSiteContainer< SiteType, SequenceType >
• sequenceContainer_ : bpp::CompressedVectorSiteContainer , bpp::TemplateVectorSiteContainer< SiteType, SequenceType >
• sequenceNames_ : bpp::CompressedVectorSiteContainer , bpp::TemplateVectorSiteContainer< SiteType, SequenceType >
• sequenceSelections_ : bpp::MaseHeader
• sequenceVectorMap_ : bpp::TemplateVectorSequenceContainer< SequenceType >
• sequential_ : bpp::Phylip
• sign_ : bpp::GranthamAAChemicalDistance
• SIGN_ARBITRARY : bpp::GranthamAAChemicalDistance
• SIGN_NONE : bpp::GranthamAAChemicalDistance
• SIGN_PC1 : bpp::GranthamAAChemicalDistance
• signMatrix_ : bpp::GranthamAAChemicalDistance
• SIMILARITY_ALL : bpp::SiteContainerTools
• SIMILARITY_NODOUBLEGAP : bpp::SiteContainerTools
• SIMILARITY_NOFULLGAP : bpp::SiteContainerTools
• SIMILARITY_NOGAP : bpp::SiteContainerTools
• site_ : bpp::SiteException
• siteContainer_ : bpp::CompressedVectorSiteContainer , bpp::TemplateVectorSiteContainer< SiteType, SequenceType >
• sites_ : bpp::AbstractTemplateSiteContainerIterator< SiteType, SequenceType, HashType >
• siteSelections_ : bpp::MaseHeader
• siteVector_ : bpp::TemplateAlignedSequenceContainer< SequenceType, SiteType >
• size_ : bpp::SimpleIndexDistance
• stat_ : bpp::BowkerTest
• stream_ : bpp::TemplateStreamSequenceIterator< SequenceType >
• strictNames_ : bpp::Fasta , bpp::Pasta
• surface_ : bpp::AASurfaceIndex
• sym_ : bpp::AAIndex2Entry , bpp::MiyataAAChemicalDistance , bpp::SimpleIndexDistance , bpp::UserAlphabetIndex2