This table was extracted from HOPPSIGEN release 4.0. Only families containing more than 10 sequences and related to a known gene (not predicted) are described.

Human: 51 most abundant families

family name number of sequences number of taxons description
HOP000259 61 1 HS12_55.PE33 ENSG00000111057 K1CR_HUMAN Keratin, type I cytoskeletal 18 (Cytokeratin 18) (K18) (CK 18).
HOP000788 56 1 HS19_16.PE1 ENSG00000185385 O7AH_HUMAN Olfactory receptor 7A17.
HOP000290 55 1 HS12_7.PE37 ENSG00000111640 G3P1_HUMAN Glyceraldehyde 3-phosphate dehydrogenase, muscle (EC (GAPDH). G3P2_HUMAN Glyceraldehyde 3-phosphate dehydrogenase, liver (EC (GAPDH).
HOP000260 42 1 HS12_55.PE34 ENSG00000170421 K2C8_HUMAN Keratin, type II cytoskeletal 8 (Cytokeratin 8) (K8) (CK 8).
HOP001151 40 1 HS21_30.PE9 Q96N32 Hypothetical protein FLJ31471.
HOP001484 36 1 HS4_113.PE7 ENSG00000109475 RL34_HUMAN 60S ribosomal protein L34.
HOP000311 35 1 HS13_10.PE2 ENSG00000122026 RL21_HUMAN 60S ribosomal protein L21.
HOP001706 33 1 HS6_136.PE11 ENSG00000112306 RS12_HUMAN 40S ribosomal protein S12.
HOP000723 25 1 HS17_9.PE30 ENSG00000161970 RL26_HUMAN 60S ribosomal protein L26.
HOP001535 24 1 HS4_41.PE2 ENSG00000163682 RL9_HUMAN 60S ribosomal protein L9.
HOP001949 23 1 HSX_71.PE3 ENSG00000102314 RS4_HUMAN 40S ribosomal protein S4, X isoform (Single copy abundant mRNA protein) (SCR10).
HOP001372 21 1 HS2_93.PE5 ENSG00000131426 KV1C_HUMAN Ig kappa chain V-I region Bi. KV1I_HUMAN Ig kappa chain V-I region HK101 precursor (Fragment). KV1N_HUMAN Ig kappa chain V-I region OU.
HOP001368 20 1 HS2_92.PE27 ENSG00000169769 KV3A_HUMAN Ig kappa chain V-III region B6. KV3B_HUMAN Ig kappa chain V-III region SIE. KV3C_HUMAN Ig kappa chain V-III region NG9 precursor (Fragment). KV3D_HUMAN Ig kappa chain V-III region Ti. KV3E_HUMAN Ig kappa chain V-III region WOL. KV3G_HUMAN Ig kappa chain V-III region GOL (Rheumatoid factor). KV3K_HUMAN Ig kappa chain V-III region IARC/BL41 precursor. KV3L_HUMAN Ig kappa chain V-III region HAH precursor. KV3M_HUMAN Ig kappa chain V-III region HIC precursor.
HOP001073 20 1 HS1_6.PE7 ENSG00000116251 RL22_HUMAN 60S ribosomal protein L22 (Epstein-Barr virus small RNA associated protein) (EBER associated protein) (EAP) (Heparin binding protein HBp15).
HOP000070 20 1 HS10_83.PE2 ENSG00000138326 RS24_HUMAN 40S ribosomal protein S24 (S19).
HOP000454 19 1 HS15_36.PE1 Q9UHA3 60S ribosomal protein L30 isolog (MY024 protein) (RPL24) (Chromosome 15 open reading frame 15).
HOP001834 18 1 HS8_76.PE11 ENSG00000147604 RL7_HUMAN 60S ribosomal protein L7.
HOP001656 18 1 HS5_42.PE2 ENSG00000145592 RL37_HUMAN 60S ribosomal protein L37 (G1.16).
HOP001447 18 1 HS3_25.PE4 ENSG00000174748 RL15_HUMAN 60S ribosomal protein L15.
HOP001901 17 1 HSX_154.PE5 ENSG00000147403 RL10_HUMAN 60S ribosomal protein L10 (QM protein) (Tumor suppressor QM) (Laminin receptor homolog).
HOP001128 17 1 HS20_50.PE10 Q13404 DNA-binding protein (EC (DJ1185N5.1.4) (Ubiquitin- conjugating enzyme E2 variant 1 (Isoform 4, CROC-1B)) (Ubiquitin- protein ligase) (Ubiquitin carrier protein). Q9UM48 UEV1As (EC (Ubiquitin-conjugating enzyme E2) (Ubiquitin- protein ligase) (Ubiquitin carrier protein). Q9UM49 UEV1Bs (EC (Ubiquitin-conjugating enzyme E2) (Ubiquitin- protein ligase) (Ubiquitin carrier protein) (Fragment).
HOP000315 17 1 HS13_13.PE6 ENSG00000132967 HMG1_HUMAN High mobility group protein 1 (HMG-1).
HOP001549 16 1 HS4_72.PE1 ENSG00000109176 UDBF_HUMAN UDP-glucuronosyltransferase 2B15 precursor, microsomal (EC (UDPGT) (UDPGTH-3) (HLUG4).
HOP000871 16 1 HS19_55.PE66 ENSG00000087086 FRIL_HUMAN Ferritin light chain (Ferritin L subunit).
HOP000870 16 1 HS19_55.PE49 ENSG00000063177 RL18_HUMAN 60S ribosomal protein L18.
HOP000006 16 1 HS10_102.PE19 ENSG00000171314 PMG1_HUMAN Phosphoglycerate mutase 1 (EC (EC (EC (Phosphoglycerate mutase isozyme B) (PGAM-B) (BPG-dependent PGAM 1).
HOP001258 15 1 HS2_179.PE13 ENSG00000170202 H33_HUMAN Histone H3.3 (H3.A) (H3.B) (H3.3Q).
HOP000173 15 1 HS11_67.PE33 Q9UID3 ANG2 (Chromosome 11 open reading frame2).
HOP001894 14 1 HSX_140.PE2 O60801
HOP001304 14 1 HS2_243.PE2 ENSG00000157985 CEG2_HUMAN Centaurin gamma 2.
HOP000153 14 1 HS11_63.PE3 ENSG00000167996 FRIH_HUMAN Ferritin heavy chain (Ferritin H subunit).
HOP001266 13 1 HS2_182.PE4 Q96EN5
HOP000625 13 1 HS17_39.PE1 ENSG00000108298 RL19_HUMAN 60S ribosomal protein L19.
HOP000475 13 1 HS15_50.PE4 ENSG00000137818 RLA1_HUMAN 60S acidic ribosomal protein P1.
HOP000365 13 1 HS14_33.PE8 Q9C013 Ninein isotype 2. Q9HBY5 Ninein centrosomal protein (Ninein centrosomal protein isoform A) (Ninein centrosomal protein isoform B) (Fragment).
HOP000104 13 1 HS11_126.PE2 ENSG00000109971 HS7C_HUMAN Heat shock cognate 71 kDa protein.
HOP001008 12 1 HS1_231.PE6 ENSG00000143632 ACTS_HUMAN Actin, alpha skeletal muscle (Alpha-actin 1).
HOP000699 12 1 HS17_76.PE20 ENSG00000132475 H33_HUMAN Histone H3.3 (H3.A) (H3.B) (H3.3Q).
HOP000357 12 1 HS14_21.PE9 ENSG00000150527 MEA6_HUMAN Meningioma-expressed antigen 6/11 (MEA6) (MEA11).
HOP000318 12 1 HS13_28.PE10 ENSG00000133112 TCTP_HUMAN Translationally controlled tumor protein (TCTP) (p23) (Histamine- releasing factor) (HRF).
HOP001789 11 1 HS7_26.PE7 ENSG00000172115 CYC_HUMAN Cytochrome c.
HOP001272 11 1 HS2_203.PE4 ENSG00000115541 CH10_HUMAN 10 kDa heat shock protein, mitochondrial (Hsp10) (10 kDa chaperonin) (CPN10).
HOP000802 11 1 HS19_19.PE12 ENSG00000006717 RL40_HUMAN 60S ribosomal protein L40 (CEP52). UBIQ_HUMAN Ubiquitin.
HOP000643 11 1 HS17_42.PE9 ENSG00000131469 RL27_HUMAN 60S ribosomal protein L27.
HOP000487 11 1 HS15_64.PE17 ENSG00000184779 RS17_HUMAN 40S ribosomal protein S17.
HOP000413 11 1 HS14_74.PE3 ENSG00000100764 PRS4_HUMAN 26S protease regulatory subunit 4 (P26s4).
HOP001849 10 1 HS9_133.PE8 ENSG00000148303 RL7A_HUMAN 60S ribosomal protein L7a (Surfeit locus protein 3) (PLA-X polypeptide).
HOP001677 10 1 HS5_78.PE10 Q9NW66 Hypothetical protein.
HOP001614 10 1 HS5_154.PE16 ENSG00000164587 RS14_HUMAN 40S ribosomal protein S14 (PRO2640).
HOP000560 10 1 HS16_58.PE17 Q9Y2Y0 ARF-like 2 binding protein BART1 (Binder of ARL TWO).
HOP000142 10 1 HS11_58.PE37 Q8NH29 Seven transmembrane helix receptor.

Mouse: 27 most abundant families

family name number of sequences number of taxons description
HOP002655 56 1 MM2_25.PE33 RL7A_MOUSE 60S ribosomal protein L7a (Surfeit locus protein 3).
HOP002372 36 1 MM16_31.PE13 R35A_MOUSE 60S ribosomal protein L35a.
HOP002062 36 1 MM11_116.PE18 Q9D0H3 10 days embryo cDNA, RIKEN full-length enriched library, clone:2610017D13, full insert sequence.
HOP003153 24 1 MM9_95.PE8 CYPH_MOUSE
HOP002311 21 1 MM15_2.PE14 Q9D823 Adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010311G18:homolog to 60S ribosomal protein L37 (G1.16), full insert sequence.
HOP002250 20 1 MM14_11.PE10 Q9CWI5 ES cells cDNA, RIKEN full-length enriched library, clone:2410045L15:homolog to 60S ribosomal protein L15, full insert sequence.
HOP002100 20 1 MM11_68.PE10 RL26_HUMAN 60S ribosomal protein L26.
HOP002141 19 1 MM11_98.PE10 RL19_HUMAN 60S ribosomal protein L19.
HOP003080 18 1 MM8_68.PE41 UBIQ_HUMAN Ubiquitin.
HOP002079 15 1 MM11_27.PE11 R27A_MOUSE 40S ribosomal protein S27a.
HOP002513 14 1 MM19_30.PE9 RL9_MOUSE 60S ribosomal protein L9.
HOP003033 13 1 MM7_67.PE19 RS17_MOUSE 40S ribosomal protein S17.
HOP002664 13 1 MM2_38.PE7 Q8R102 Ribosomal protein L35.
HOP002113 13 1 MM11_73.PE3 Q8VF79 Olfactory receptor MOR135-14 (Olfactory receptor GA_x6K02T2P1NL-3676608-3675670).
HOP003024 12 1 MM7_33.PE14 LDHA_MOUSE L-lactate dehydrogenase A chain (EC (LDH-A) (LDH muscle subunit) (LDH-M).
HOP002430 12 1 MM17_30.PE48 RS18_HUMAN 40S ribosomal protein S18 (KE-3) (KE3).
HOP003020 11 1 MM7_31.PE37 Q9DB79 Ribosomal protein S11.
HOP002686 11 1 MM2_89.PE22 Q8VG21 Olfactory receptor MOR230-4 (Olfactory receptor GA_x6K02T2Q125-50163514-50162588).
HOP002416 11 1 MM17_24.PE28 RU1C_MOUSE U1 small nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C protein) (U1-C).
HOP002257 11 1 MM14_17.PE20 RS24_HUMAN 40S ribosomal protein S24 (S19).
HOP003028 10 1 MM7_42.PE4 RS12_MOUSE 40S ribosomal protein S12.
HOP002700 10 1 MM3_130.PE4 RL34_MOUSE 60S ribosomal protein L34.
HOP002661 10 1 MM2_31.PE30 RL12_MOUSE 60S ribosomal protein L12.
HOP002538 10 1 MM19_6.PE11 EF1G_MOUSE Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma).
HOP002422 10 1 MM17_25.PE39 SFR3_HUMAN Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor SRP20) (X16 protein).
HOP002157 10 1 MM12_109.PE13 HV05_MOUSE Ig heavy chain V region 3 precursor.
HOP001987 10 1 MM10_128.PE1 Q8VFI2 Olfactory receptor MOR110-5 (Olfactory receptor GA_x6K02T2PULF-11417610-11416669).

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