insertion_dnarep1_<strain>.txt
These files contain the numbers of insertions per gene per functional regions AFTER removing DNAREP1 insertions

table_NEWTPM_rna_dmel_modif.txt
table_NEWTPM_rna_dsim_modif.txt
These files contain the TPM obtained on genes from RNAseq data

table_NEWCOUNTS_rna_dmel_modif.txt
table_NEWCOUNTS_rna_dsim_modif.txt
These files contain the effective counts obtained on genes from RNAseq data

counts_chip_input_dmel_fbgn.txt
counts_chip_k4_dmel_fbgn.txt
counts_chip_k9_dmel_fbgn.txt
counts_chip_input_dsim_fbgn.txt
counts_chip_k4_dsim_fbgn.txt
counts_chip_k9_dsim_fbgn.txt
These files contain the counts obtained on genes from ChIPseq data

rna_te_dmel.txt
rna_te_dsim.txt
These files contain the counts obtained on TEs from RNAseq data

chip_input_et_dmel.txt
chip_k4_et_dmel.txt
chip_k9_et_dmel.txt
chip_input_et_dsim.txt
chip_k4_et_dsim.txt
chip_k9_et_dsim.txt
These files contain the counts obtained on TEs from ChIPseq data