Methanococcus jannaschii

Rearranged Oriloc output example: Previous Index Next

Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.
Genome size (bp): 1664970
Number of genes 1724
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 929 kb Terminus 1648 kb
Position(s) of the ORC/Cdc6 gene(s): 331 kb, 893.79 kb, 1095.76 kb, 1462.61 kb
Consensus predictions: Origin 691 kb Terminus 1642 kb
Significant breakpoints (p-value <0.05):

Breakpoints P-value Chromosome coordinate (kb)

GC-skew reverse 1318 0.02333 731

1365 0.04 839

AT-skew reverse 1556 0.01333 1224

1586 0.02667 1271

Segments:

From (index/coord) To (index/coord) Strand Slope

GC-skew reverse 871 (0 kb) 1318 (730.675 kb) lagging -0.283

1319 (733.8075 kb) 1365 (839.012 kb) leading -0.127

1366 (842.457 kb) 1724 (1664.862 kb) leading -0.252

AT-skew reverse 871 (0 kb) 1556 (1223.728 kb) NA -0.073

1557 (1227.1155 kb) 1586 (1270.8 kb) leading 0.017

1587 (1272.4285 kb) 1724 (1664.862 kb) leading -0.052

More G than C on the leading strand for replication - for reverse encoded genes.

	Breakpoints	P-value	Chromosome coordinate (kb)
GC-skew reverse	1318	0.02333	731
GC-skew reverse	1365	0.04	839
AT-skew reverse	1556	0.01333	1224
AT-skew reverse	1586	0.02667	1271

	From (index/coord)	To (index/coord)	Strand	Slope
GC-skew reverse	871 (0 kb)	1318 (730.675 kb)	lagging	-0.283
	1319 (733.8075 kb)	1365 (839.012 kb)	leading	-0.127
	1366 (842.457 kb)	1724 (1664.862 kb)	leading	-0.252
AT-skew reverse	871 (0 kb)	1556 (1223.728 kb)	NA	-0.073
	1557 (1227.1155 kb)	1586 (1270.8 kb)	leading	0.017
	1587 (1272.4285 kb)	1724 (1664.862 kb)	leading	-0.052