Rearranged Oriloc output example: Previous Index Next
Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.
Genome size (bp): 1138011
Number of genes 1034
Oriloc predictions: Origin 0 kb Terminus 554 kb
Worning et al., 2006: Origin 3 kb Terminus 553 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1.434 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.7 kb
Consensus predictions: Origin 0 kb Terminus 554 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 353 | NA | 544 |
| GC-skew reverse | 714 | NA | 561 |
| AT-skew forward | 354 | NA | 546 |
| AT-skew reverse | 716 | NA | 564 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 353 (544.344 kb) | leading | 0.299 |
| 354 (545.979 kb) | 555 (1137.932 kb) | lagging | -0.075 | |
| GC-skew reverse | 556 (0 kb) | 714 (561.0875 kb) | leading | 0.06 |
| 715 (562.618 kb) | 1034 (1137.932 kb) | lagging | -0.262 | |
| AT-skew forward | 1 (0 kb) | 354 (545.979 kb) | leading | -0.315 |
| 355 (547.648 kb) | 555 (1137.932 kb) | lagging | -0.094 | |
| AT-skew reverse | 556 (0 kb) | 716 (563.8345 kb) | leading | 0.09 |
| 717 (565.397 kb) | 1034 (1137.932 kb) | lagging | 0.279 |
More G than C on the leading strand for replication.