Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera.
Genome size (bp): 640681
Number of genes 563
Oriloc predictions: Origin 0 kb Terminus 342 kb
Worning et al., 2006: Origin 627 kb Terminus 331 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 38.44 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 13.24 kb
Consensus predictions: Origin 0 kb Terminus 342 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 104 | NA | 180 |
| 171 | NA | 337 | |
| GC-skew reverse | 425 | NA | 362 |
| 531 | NA | 579 | |
| AT-skew forward | 180 | NA | 359 |
| AT-skew reverse | 417 | NA | 342 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 104 (180.0005 kb) | leading | 0.205 |
| 105 (183.1675 kb) | 171 (337.1975 kb) | leading | 0.141 | |
| 172 (338.0335 kb) | 303 (640.441 kb) | lagging | 0.031 | |
| GC-skew reverse | 304 (0 kb) | 425 (361.99 kb) | leading | 0.009 |
| 426 (362.4875 kb) | 531 (578.632 kb) | lagging | -0.233 | |
| 532 (580.5415 kb) | 563 (640.441 kb) | lagging | -0.049 | |
| AT-skew forward | 1 (0 kb) | 180 (358.896 kb) | leading | -0.064 |
| 181 (360.6275 kb) | 303 (640.441 kb) | lagging | 0.052 | |
| AT-skew reverse | 304 (0 kb) | 417 (341.8505 kb) | leading | -0.025 |
| 418 (343.1015 kb) | 563 (640.441 kb) | lagging | 0.075 |
More G than C on the leading strand for replication.